Tag: R

Interview Ajay Ohri Decisionstats.com with DMR

From-

http://www.dataminingblog.com/data-mining-research-interview-ajay-ohri/

Here is the winner of the Data Mining Research People Award 2010: Ajay Ohri! Thanks to Ajay for giving some time to answer Data Mining Research questions. And all the best to his blog, Decision Stat!

Data Mining Research (DMR): Could you please introduce yourself to the readers of Data Mining Research?

Ajay Ohri (AO): I am a business consultant and writer based out of Delhi- India. I have been working in and around the field of business analytics since 2004, and have worked with some very good and big companies primarily in financial analytics and outsourced analytics. Since 2007, I have been writing my blog at http://decisionstats.com which now has almost 10,000 views monthly.

All in all, I wrote about data, and my hobby is also writing (poetry). Both my hobby and my profession stem from my education ( a masters in business, and a bachelors in mechanical engineering).

My research interests in data mining are interfaces (simpler interfaces to enable better data mining), education (making data mining less complex and accessible to more people and students), and time series and regression (specifically ARIMAX)
In business my research interests software marketing strategies (open source, Software as a service, advertising supported versus traditional licensing) and creation of technology and entrepreneurial hubs (like Palo Alto and Research Triangle, or Bangalore India).

DMR: I know you have worked with both SAS and R. Could you give your opinion about these two data mining tools?

AO: As per my understanding, SAS stands for SAS language, SAS Institute and SAS software platform. The terms are interchangeably used by people in industry and academia- but there have been some branding issues on this.
I have not worked much with SAS Enterprise Miner , probably because I could not afford it as business consultant, and organizations I worked with did not have a budget for Enterprise Miner.
I have worked alone and in teams with Base SAS, SAS Stat, SAS Access, and SAS ETS- and JMP. Also I worked with SAS BI but as a user to extract information.
You could say my use of SAS platform was mostly in predictive analytics and reporting, but I have a couple of projects under my belt for knowledge discovery and data mining, and pattern analysis. Again some of my SAS experience is a bit dated for almost 1 year ago.

I really like specific parts of SAS platform – as in the interface design of JMP (which is better than Enterprise Guide or Base SAS ) -and Proc Sort in Base SAS- I guess sequential processing of data makes SAS way faster- though with computing evolving from Desktops/Servers to even cheaper time shared cloud computers- I am not sure how long Base SAS and SAS Stat can hold this unique selling proposition.

I dislike the clutter in SAS Stat output, it confuses me with too much information, and I dislike shoddy graphics in the rendering output of graphical engine of SAS. Its shoddy coding work in SAS/Graph and if JMP can give better graphics why is legacy source code preventing SAS platform from doing a better job of it.

I sometimes think the best part of SAS is actually code written by Goodnight and Sall in 1970’s , the latest procs don’t impress me much.

SAS as a company is something I admire especially for its way of treating employees globally- but it is strange to see the rest of tech industry not following it. Also I don’t like over aggression and the SAS versus Rest of the Analytics /Data Mining World mentality that I sometimes pick up when I deal with industry thought leaders.

I think making SAS Enterprise Miner, JMP, and Base SAS in a completely new web interface priced at per hour rates is my wishlist but I guess I am a bit sentimental here- most data miners I know from early 2000’s did start with SAS as their first bread earning software. Also I think SAS needs to be better priced in Business Intelligence- it seems quite cheap in BI compared to Cognos/IBM but expensive in analytical licensing.

If you are a new stats or business student, chances are – you may know much more R than SAS today. The shift in education at least has been very rapid, and I guess R is also more of a platform than a analytics or data mining software.

I like a lot of things in R- from graphics, to better data mining packages, modular design of software, but above all I like the can do kick ass spirit of R community. Lots of young people collaborating with lots of young to old professors, and the energy is infectious. Everybody is a CEO in R ’s world. Latest data mining algols will probably start in R, published in journals.

Which is better for data mining SAS or R? It depends on your data and your deadline. The golden rule of management and business is -it depends.

Also I have worked with a lot of KXEN, SQL, SPSS.

DMR: Can you tell us more about Decision Stats? You have a traffic of 120′000 for 2010. How did you reach such a success?

AO: I don’t think 120,000 is a success. Its not a failure. It just happened- the more I wrote, the more people read.In 2007-2008 I used to obsess over traffic. I tried SEO, comments, back linking, and I did some black hat experimental stuff. Some of it worked- some didn’t.

In the end, I started asking questions and interviewing people. To my surprise, senior management is almost always more candid , frank and honest about their views while middle managers, public relations, marketing folks can be defensive.

Social Media helped a bit- Twitter, Linkedin, Facebook really helped my network of friends who I suppose acted as informal ambassadors to spread the word.
Again I was constrained by necessity than choices- my middle class finances ( I also had a baby son in 2007-my current laptop still has some broken keys :) – by my inability to afford traveling to conferences, and my location Delhi isn’t really a tech hub.

The more questions I asked around the internet, the more people responded, and I wrote it all down.

I guess I just was lucky to meet a lot of nice people on the internet who took time to mentor and educate me.

I tried building other websites but didn’t succeed so i guess I really don’t know. I am not a smart coder, not very clever at writing but I do try to be honest.

Basic economics says pricing is proportional to demand and inversely proportional to supply. Honest and candid opinions have infinite demand and an uncertain supply.

DMR: There is a rumor about a R book you plan to publish in 2011 :-) Can you confirm the rumor and tell us more?

AO: I just signed a contract with Springer for ” R for Business Analytics”. R is a great software, and lots of books for statistically trained people, but I felt like writing a book for the MBAs and existing analytics users- on how to easily transition to R for Analytics.

Like any language there are tricks and tweaks in R, and with a focus on code editors, IDE, GUI, web interfaces, R’s famous learning curve can be bent a bit.

Making analytics beautiful, and simpler to use is always a passion for me. With 3000 packages, R can be used for a lot more things and a lot more simply than is commonly understood.
The target audience however is business analysts- or people working in corporate environments.

Brief Bio-
Ajay Ohri has been working in the field of analytics since 2004 , when it was a still nascent emerging Industries in India. He has worked with the top two Indian outsourcers listed on NYSE,and with Citigroup on cross sell analytics where he helped sell an extra 50000 credit cards by cross sell analytics .He was one of the very first independent data mining consultants in India working on analytics products and domestic Indian market analytics .He regularly writes on analytics topics on his web site www.decisionstats.com and is currently working on open source analytical tools like R besides analytical software like SPSS and SAS.

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Multi State Models

Arc de Triomphe

A special issue of the Journal of Statistical Software has come out devoted to Multi State Models and Competing Risks. It is a must read for anyone with interest in Pharma Analytics or Survival Analysis- even if you dont know much R

Here is an extract from “mstate: An R Package for the Analysis ofCompeting Risks and Multi-State Models”

Multi-state models are a very useful tool to answer a wide range of questions in sur-vival analysis that cannot, or only in a more complicated way, be answered by classicalmodels. They are suitable for both biomedical and other applications in which time-to-event variables are analyzed. However, they are still not frequently applied. So far, animportant reason for this has been the lack of available software. To overcome this prob-lem, we have developed the mstate package in R for the analysis of multi-state models.The package covers all steps of the analysis of multi-state models, from model buildingand data preparation to estimation and graphical representation of the results. It canbe applied to non- and semi-parametric (Cox) models. The package is also suitable forcompeting risks models, as they are a special category of multi-state models.

 

—————————–

 

Issues for JSS Special Volume 38: Competing Risks and Multi-State Models

Special Issue about Competing Risks and Multi-State Models

Hein Putter
Vol. 38, Issue 1, Jan 2011
Submitted 2011-01-03, Accepted 2011-01-03

Analyzing Competing Risk Data Using the R timereg Package

Thomas H. Scheike, Mei-Jie Zhang
Vol. 38, Issue 2, Jan 2011
Submitted 2009-05-25, Accepted 2010-06-22

p3state.msm: Analyzing Survival Data from an Illness-Death Model

Luís Filipe Meira Machado, Javier Roca-Pardiñas
Vol. 38, Issue 3, Jan 2011
Submitted 2009-06-30, Accepted 2010-03-02

Empirical Transition Matrix of Multi-State Models: The etm Package

Arthur Allignol, Martin Schumacher, Jan Beyersmann
Vol. 38, Issue 4, Jan 2011
Submitted 2009-01-08, Accepted 2010-03-11

Lexis: An R Class for Epidemiological Studies with Long-Term Follow-Up

Martyn Plummer, Bendix Carstensen
Vol. 38, Issue 5, Jan 2011
Submitted 2010-02-09, Accepted 2010-09-16

Using Lexis Objects for Multi-State Models in R

Bendix Carstensen, Martyn Plummer
Vol. 38, Issue 6, Jan 2011
Submitted 2010-02-09, Accepted 2010-09-16

mstate: An R Package for the Analysis of Competing Risks and Multi-State Models

Liesbeth C. de Wreede, Marta Fiocco, Hein Putter
Vol. 38, Issue 7, Jan 2011
Submitted 2010-01-17, Accepted 2010-08-20

Multi-State Models for Panel Data: The msm Package for R

Christopher Jackson
Vol. 38, Issue 8, Jan 2011
Submitted 2009-07-21, Accepted 2010-08-18

_______________________________________________
JSS-Announce mailing list
JSS-Announce@lists.stat.ucla.edu
http://lists.stat.ucla.edu/mailman/listinfo/jss-announce

 

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Book Reviews- Hindu Myths- Mere Christianity

A statue of Hindu deity Shiva in a temple in B...
Image via Wikipedia

Over the month long break I took, I was helping firm up my ideas for R for Analytics , I also took a break and read some books. Here are brief reviews of two, three of them-

1) Hindu Myths

This is a classical book translated from original Sanskrit written by Professor Wendy O Flaherty of University of Chicago. I found some of the older myths very interesting in terms of contradictions, retelling the same story in a modified way by another classic, the beautiful poetic and fantastic imagery evoked by Hindu myths. Some stories are as relevant in prayers, fasts and religious ceremonies as they were around 11000 years while most have morphed , edited or even distorted.

It should help the non Indian reader understand why hundreds of millions of conservative Indians worship Shiv Ling ( or literally an idol of the Phallus of Shiva), the Hindu two cents of creation of the universe, and the somewhat fantastic stories on super heroes /gods/ in the ancient world.

The book suffers from a few drawbacks in my opinion-

1) Sanskrit is a bit like Latin- you can lose not just the flavor but original meaning of words and situational context. Some of the stories made better sense when i read a more recent Hindi translation.

2) An excessive emphasis on sexual imagery rather than emotional imagery. The author seems wonder struck to read and translate ancient indians were so matter of fact about physical relationships. However the words were always written in discrete poetic than crass soft pornography.

3) Almost no drawings or figures. This makes the book a bit dense to read at 300 pages.

I liked another book on Hindu Myths (Myth= Mithya which I read in 2009) and you can see if you can read it if you find the topic interesting.

A Handbook of Hindu Mythology

Hindus have one God.
They also have 330 million gods: male gods, female gods, personal gods, family gods, household gods, village gods, gods of space and time, gods for specific castes and particular professions, gods who reside in trees, in animals, in minerals, in geometrical patterns and in man-made objects.
Then there are a whole host of demons.
But no Devil.


Mere Christianity by C S Lewis is a classic book on reinterpreting Christianity in modern times. However the author wrote this when World War 2 was on and it seems more like a British or Anglo Saxon interpretation of beliefs of Christ Jesus– who was actually a Jewish teacher born in Middle East Asia.

While the language and reading makes it much easier to read- it is recommended more at Western audiences, than Eastern ones, as it seems some of the parables are a more palatable re interpretation of the New Testament. The Bible is a deceptively easy book to read, the language is short and beautiful-and the original parables in the Gospels remain powerful easy to understand.

C S Lewis tends to emphasize morality than religiosity or faith, and there is not much comparison with any other faith or alternative morality. Dumbing down the Bible so as to market it better to reluctant consumers seems to be Mr Lewis intention and it is not as scholarly a work as an exercise in pure prose.

However it is quite good as a self improvement book and is quite better than the “You Can Win” kind of books or even business concept books.

Note- I find reading books on religion as good exercises in reading the fountain source of philosophies. As a polytheist- I tend to read more than one faith.

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A Dare for Analytics Bloggers in 2011

A new challenge for R , SAS and all techie bloggers-

http://en.blog.wordpress.com/2010/12/30/challenge-for-2011-want-to-blog-more-often/

As part of the DailyPost, we’re launching two campaigns:

  • Post a Day 2011: Post something to your blog every single day through 2011
  • Post a Week 2011: Post to your blog at least once a week through 2011

Signing up is simple – do the following:

  1. Post on your blog, right now, that you’re participating
  2. (You can grab a sample post from dailypost.wordpress.com)
  3. Use the tag postaday2011 or postaweek2011 in your posts (tips on tagging here)
  4. Go to dailypost.wordpress.com
  5. Subscribe to dailypost.wordpress.com– you’ll get reminders and inspirations every day to help you bring your full potential to your WordPress blog!

 

Do you write a blog or own a website?

Well how about taking up this challenge?

Who Dares-    Wins

Game On!!!

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R Journal Dec 2010 and R for Business Analytics

A Bold GNU Head
Image via Wikipedia

I almost missed out on the R Journal for this month- great reading,

and I liked Dr Hadley’s article on stringr package the best. Really really useful package and nice writing too

http://journal.r-project.org/archive/2010-2/RJournal_2010-2_Wickham.pdf

(incidentally I just downloaded a local copy of his ggplot website at http://had.co.nz/ggplot2/ggplot-static.zip

I aim to really read that one up

Okay, announcement time

I just signed a contract with Springer for a book on R, some what in first half of 2011

” R for Business Analytics”

its going to be a more business analytics than a stats perspective ( I am a MBA /Mech Engineer)

and use cases would be business analytics cases. Do write to me if you need help doing some analytics in R (business use cases)- or want something featured. Big focus would be on GUI and easier analytics, using the Einsteinian principle to make things as simple as possible but no simpler)

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The Year 2010

Nokia N800 internet tablet, with open source s...
Image via Wikipedia

My annual traffic to this blog was almost 99,000 . Add in additional views on networking sites plus the 400 plus RSS readers- so I can say traffic was 1,20,000 for 2010. Nice. Thanks for reading and hope it was worth your time. (this is a long post and will take almost 440 secs to read but the summary is just given)

My intent is either to inform you, give something useful or atleast something interesting.

see below-

Jan Feb Mar Apr May Jun
2010 6,311 4,701 4,922 5,463 6,493 4,271
Jul Aug Sep Oct Nov Dec Total
5,041 5,403 17,913 16,430 11,723 10,096 98,767

 

 

Sandro Saita from http://www.dataminingblog.com/ just named me for an award on his blog (but my surname is ohRi , Sandro left me without an R- What would I be without R :)) ).

Aw! I am touched. Google for “Data Mining Blog” and Sandro is the best that it is in data mining writing.

”

DMR People Award 2010
There are a lot of active people in the field of data mining. You can discuss with them on forums. You can read their blogs. You can also meet them in events such as PAW or KDD. Among the people I follow on a regular basis, I have elected:

Ajay Ori

He has been very active in 2010, especially on his blog . Good work Ajay and continue sharing your experience with us!”

What did I write in 2010- stuff.

What did you read on this blog- well thats the top posts list.

2009-12-31 to Today

Title Views
Home page More stats 21,150
Top 10 Graphical User Interfaces in Statistical Software More stats 6,237
Wealth = function (numeracy, memory recall) More stats 2,014
Matlab-Mathematica-R and GPU Computing More stats 1,946
The Top Statistical Softwares (GUI) More stats 1,405
About DecisionStats More stats 1,352
Using Facebook Analytics (Updated) More stats 1,313
Test drive a Chrome notebook. More stats 1,170
Top ten RRReasons R is bad for you ? More stats 1,157
Libre Office More stats 1,151
Interview Hadley Wickham R Project Data Visualization Guru More stats 1,007
Using Red R- R with a Visual Interface More stats 854
SAS Institute files first lawsuit against WPS- Episode 1 More stats 790
Interview Professor John Fox Creator R Commander More stats 764
R Package Creating More stats 754
Windows Azure vs Amazon EC2 (and Google Storage) More stats 726
Norman Nie: R GUI and More More stats 716
Startups for Geeks More stats 682
Google Maps – Jet Ski across Pacific Ocean More stats 670
Not so AWkward after all: R GUI RKWard More stats 579
Red R 1.8- Pretty GUI More stats 570
Parallel Programming using R in Windows More stats 569
R is an epic fail or is it just overhyped More stats 559
Enterprise Linux rises rapidly:New Report More stats 537
Rapid Miner- R Extension More stats 518
Creating a Blog Aggregator for free More stats 504
So which software is the best analytical software? Sigh- It depends More stats 473
Revolution R for Linux More stats 465
John Sall sets JMP 9 free to tango with R More stats 460

So how do people come here –

well I guess I owe Tal G for almost 9000 views ( incidentally I withdrew posting my blog from R- Bloggers and Analyticbridge blogs – due to SEO keyword reasons and some spam I was getting see (below))

http://r-bloggers.com is still the CAT’s whiskers and I read it  a lot.

I still dont know who linked my blog to a free sex movie site with 400 views but I have a few suspects.

2009-12-31 to Today

Referrer Views
r-bloggers.com 9,131
Reddit 3,829
rattle.togaware.com 1,500
Twitter 1,254
Google Reader 1,215
linkedin.com 717
freesexmovie.irwanaf.com 422
analyticbridge.com 341
Google 327
coolavenues.com 322
Facebook 317
kdnuggets.com 298
dataminingblog.com 278
en.wordpress.com 185
google.co.in 151
xianblog.wordpress.com 130
inside-r.org 124
decisionstats.com 119
ifreestores.com 117
bits.blogs.nytimes.com 108

–

Still reading this post- gosh let me sell you some advertising. It is only $100 a month (yes its a recession)

Advertisers are treated on First in -Last out (FILO)

I have been told I am obsessed with SEO , but I dont care much for search engines apart from Google, and yes SEO is an interesting science (they should really re name it GEO or Google Engine Optimization)

Apparently Hadley Wickham and Donald Farmer are big keywords for me so I should be more respectful I guess.

Search Terms for 365 days ending 2010-12-31 (Summarized)

2009-12-31 to Today

Search Views
libre office 925
facebook analytics 798
test drive a chrome notebook 467
test drive a chrome notebook. 215
r gui 203
data mining 163
wps sas lawsuit 158
wordle.net 133
wps sas 123
google maps jet ski 123
test drive chrome notebook 96
sas wps 89
sas wps lawsuit 85
chrome notebook test drive 83
decision stats 83
best statistics software 74
hadley wickham 72
google maps jetski 72
libreoffice 70
doug savage 65
hive tutorial 58
funny india 56
spss certification 52
donald farmer microsoft 51
best statistical software 49

What about outgoing links? Apparently I need to find a way to ask Google to pay me for the free advertising I gave their chrome notebook launch. But since their search engine and browser is free to me, guess we are even steven.

Clicks for 365 days ending 2010-12-31 (Summarized)

2009-12-31 to Today

URL Clicks
rattle.togaware.com 378
facebook.com/Decisionstats 355
rapid-i.com/content/view/182/196 319
services.google.com/fb/forms/cr48basic 313
red-r.org 228
decisionstats.wordpress.com/2010/05/07/the-top-statistical-softwares-gui 199
teamwpc.co.uk/products/wps 162
r4stats.com/popularity 148
r-statistics.com/2010/04/r-and-the-google-summer-of-code-2010-accepted-students-and-projects 138
socserv.mcmaster.ca/jfox/Misc/Rcmdr 138
spss.com/certification 116
learnr.wordpress.com 114
dudeofdata.com/decisionstats 108
r-project.org 107
documentfoundation.org/faq 104
goo.gl/maps/UISY 100
inside-r.org/download 96
en.wikibooks.org/wiki/R_Programming 92
nytimes.com/external/readwriteweb/2010/12/07/07readwriteweb-report-google-offering-chrome-notebook-test-11919.html 92
sourceforge.net/apps/mediawiki/rkward/index.php?title=Main_Page 92
analyticdroid.togaware.com 88
yeroon.net/ggplot2 87

so in 2010,

SAS remained top daddy in business analytics,

R made revolutionary strides in terms of new packages,

JMP  launched a new version,

SPSS got integrated with Cognos,

Oracle sued Google and did build a great Data Mining GUI,

Libre Office gave you a non Oracle Open office ( or open even more office)

2011 looks like  a fun year. Have safe partying .

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Troubleshooting Rattle Installation- Data Mining R GUI

Screenshot of Synaptic Package Manager running...
Image via Wikipedia

I really find the Rattle GUI very very nice and easy to do any data mining task. The software is available from http://rattle.togaware.com/

The only issue is Rattle can be quite difficult to install due to dependencies on GTK+

After fiddling for a couple of years- this is what I did

1) Created dual boot OS- Basically downloaded the netbook remix from http://ubuntu.com I created a dual boot OS so you can choose at the beginning whether to use Windows or Ubuntu Linux in that session.  Alternatively you can download VM Player www.vmware.com/products/player/ if you want to do both

2) Download R packages using Ubuntu packages and Install GTK+ dependencies before that.

GTK + Requires

  1. Libglade
  2. Glib
  3. Cairo
  4. Pango
  5. ATK

If  you are a Linux newbie like me who doesnt get the sudo apt get, tar, cd, make , install rigmarole – scoot over to synaptic software packages or just the main ubuntu software centre and download these packages one by one.

For R Dependencies, you need

  • PMML
  • XML
  • RGTK2

Again use r-cran as the prefix to these package names and simply install (almost the same way Windows does it easily -double click)

see http://packages.ubuntu.com/search?suite=lucid&searchon=names&keywords=r-cran

4) Install Rattle from source

http://rattle.togaware.com/rattle-download.html

Advanced users can download the Rattle source packages directly:

Save theses to your hard disk (e.g., to your Desktop) but don’t extract them. Then, on GNU/Linux run the install command shown below. This command is entered into a terminal window:

  • R CMD INSTALL rattle_2.6.0.tar.gz

After installation-

5) Type library(rattle) and rattle.info to get messages on what R packages to update for a proper functioning

</code>

> library(rattle)
Rattle: Graphical interface for data mining using R.
Version 2.6.0 Copyright (c) 2006-2010 Togaware Pty Ltd.
Type 'rattle()' to shake, rattle, and roll your data.
> rattle.info()
Rattle: version 2.6.0
R: version 2.11.1 (2010-05-31) (Revision 52157)

Sysname: Linux
Release: 2.6.35-23-generic
Version: #41-Ubuntu SMP Wed Nov 24 10:18:49 UTC 2010
Nodename: k1-M725R
Machine: i686
Login: k1ng
User: k1ng

Installed Dependencies
RGtk2: version 2.20.3
pmml: version 1.2.26
colorspace: version 1.0-1
cairoDevice: version 2.14
doBy: version 4.1.2
e1071: version 1.5-24
ellipse: version 0.3-5
foreign: version 0.8-41
gdata: version 2.8.1
gtools: version 2.6.2
gplots: version 2.8.0
gWidgetsRGtk2: version 0.0-69
Hmisc: version 3.8-3
kernlab: version 0.9-12
latticist: version 0.9-43
Matrix: version 0.999375-46
mice: version 2.4
network: version 1.5-1
nnet: version 7.3-1
party: version 0.9-99991
playwith: version 0.9-53
randomForest: version 4.5-36 upgrade available 4.6-2
rggobi: version 2.1.16
survival: version 2.36-2
XML: version 3.2-0
bitops: version 1.0-4.1

Upgrade the packages with:

 > install.packages(c("randomForest"))

<code>

Now upgrade whatever package rattle.info tells to upgrade.

This is much simpler and less frustrating than some of the other ways to install Rattle.

If all goes well, you will see this familiar screen popup when you type

>rattle()

 

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