Running R on Windows Azure #rstats #cloud

Here is a brief tutorial for people to run R on Windows Azure Cloud (OS=Windows in this case , but there are 4 kinds of Linux also available)

There is a free 90 day trial so you can run R for free on the cloud for free (since Google Cloud Compute is still in closed hush hush beta)

Go to https://www.windowsazure.com/en-us/pricing/free-trial/

Different kinds of Clouds

Some slides I liked on cloud computing infrastructure as offered by Amazon, IBM, Google , Windows and Oracle

 

 

Revolution R Enterprise 6.0 launched!

Just got the email-more software is good news!

Revolution R Enterprise 6.0 for 32-bit and 64-bit Windows and 64-bit Red Hat Enterprise Linux (RHEL 5.x and RHEL 6.x) features an updated release of the RevoScaleR package that provides fast, scalable data management and data analysis: the same code scales from data frames to local, high-performance .xdf files to data distributed across a Windows HPC Server cluster or IBM Platform Computing LSF cluster.  RevoScaleR also allows distribution of the execution of essentially any R function across cores and nodes, delivering the results back to the user.

Detailed information on what’s new in 6.0 and known issues:
http://www.revolutionanalytics.com/doc/README_RevoEnt_Windows_6.0.0.pdf

and from the manual-lots of function goodies for Big Data

 

  • IBM Platform LSF Cluster support [Linux only]. The new RevoScaleR function, RxLsfCluster, allows you to create a distributed compute context for the Platform LSF workload manager.
  •  Azure Burst support added for Microsoft HPC Server [Windows only]. The new RevoScaleR function, RxAzureBurst, allows you to create a distributed compute context to have computations performed in the cloud using Azure Burst
  • The rxExec function allows distributed execution of essentially any R function across cores and nodes, delivering the results back to the user.
  • functions RxLocalParallel and RxLocalSeq allow you to create compute context objects for local parallel and local sequential computation, respectively.
  • RxForeachDoPar allows you to create a compute context using the currently registered foreach parallel backend (doParallel, doSNOW, doMC, etc.). To execute rxExec calls, simply register the parallel backend as usual, then set your compute context as follows: rxSetComputeContext(RxForeachDoPar())
  • rxSetComputeContext and rxGetComputeContext simplify management of compute contexts.
  • rxGlm, provides a fast, scalable, distributable implementation of generalized linear models. This expands the list of full-featured high performance analytics functions already available: summary statistics (rxSummary), cubes and cross tabs (rxCube,rxCrossTabs), linear models (rxLinMod), covariance and correlation matrices (rxCovCor),
    binomial logistic regression (rxLogit), and k-means clustering (rxKmeans)example: a Tweedie family with 1 million observations and 78 estimated coefficients (categorical data)
    took 17 seconds with rxGlm compared with 377 seconds for glm on a quadcore laptop

     

    and easier working with R’s big brother SAS language

     

    RevoScaleR high-performance analysis functions will now conveniently work directly with a variety of external data sources (delimited and fixed format text files, SAS files, SPSS files, and ODBC data connections). New functions are provided to create data source objects to represent these data sources (RxTextData, RxOdbcData, RxSasData, and RxSpssData), which in turn can be specified for the ‘data’ argument for these RevoScaleR analysis functions: rxHistogramrxSummary, rxCube, rxCrossTabs, rxLinMod, rxCovCor, rxLogit, and rxGlm.


    example, 

    you can analyze a SAS file directly as follows:


    # Create a SAS data source with information about variables and # rows to read in each chunk

    sasDataFile <- file.path(rxGetOption(“sampleDataDir”),”claims.sas7bdat”)
    sasDS <- RxSasData(sasDataFile, stringsAsFactors = TRUE,colClasses = c(RowNum = “integer”),rowsPerRead = 50)

    # Compute and draw a histogram directly from the SAS file
    rxHistogram( ~cost|type, data = sasDS)
    # Compute summary statistics
    rxSummary(~., data = sasDS)
    # Estimate a linear model
    linModObj <- rxLinMod(cost~age + car_age + type, data = sasDS)
    summary(linModObj)
    # Import a subset into a data frame for further inspection
    subData <- rxImport(inData = sasDS, rowSelection = cost > 400,
    varsToKeep = c(“cost”, “age”, “type”))
    subData

 

The installation instructions and instructions for getting started with Revolution R Enterprise & RevoDeployR for Windows: http://www.revolutionanalytics.com/downloads/instructions/windows.php

2011 Analytics Recap

Events in the field of data that impacted us in 2011

1) Oracle unveiled plans for R Enterprise. This is one of the strongest statements of its focus on in-database analytics. Oracle also unveiled plans for a Public Cloud

2) SAS Institute released version 9.3 , a major analytics software in industry use.

3) IBM acquired many companies in analytics and high tech. Again.However the expected benefits from Cognos-SPSS integration are yet to show a spectacular change in market share.

2011 Selected acquisitions

Emptoris Inc. December 2011

Cúram Software Ltd. December 2011

DemandTec December 2011

Platform Computing October 2011

 Q1 Labs October 2011

Algorithmics September 2011

 i2 August 2011

Tririga March 2011

 

4) SAP promised a lot with SAP HANA- again no major oohs and ahs in terms of market share fluctuations within analytics.

http://www.sap.com/india/news-reader/index.epx?articleID=17619

5) Amazon continued to lower prices of cloud computing and offer more options.

http://aws.amazon.com/about-aws/whats-new/2011/12/21/amazon-elastic-mapreduce-announces-support-for-cc2-8xlarge-instances/

6) Google continues to dilly -dally with its analytics and cloud based APIs. I do not expect all the APIs in the Google APIs suit to survive and be viable in the enterprise software space.  This includes Google Cloud Storage, Cloud SQL, Prediction API at https://code.google.com/apis/console/b/0/ Some of the location based , translation based APIs may have interesting spin offs that may be very very commercially lucrative.

7) Microsoft -did- hmm- I forgot. Except for its investment in Revolution Analytics round 1 many seasons ago- very little excitement has come from MS plans in data mining- The plugins for cloud based data mining from Excel remain promising yet , while Azure remains a stealth mode starter.

8) Revolution Analytics promised us a GUI and didnt deliver (till yet 🙂 ) . But it did reveal a much better Enterprise software Revolution R 5.0 is one of the strongest enterprise software in the R /Stat Computing space and R’s memory handling problem is now an issue of perception than actual stuff thanks to newer advances in how it is used.

9) More conferences, more books and more news on analytics startups in 2011. Big Data analytics remained a strong buzzword. Expect more from this space including creative uses of Hadoop based infrastructure.

10) Data privacy issues continue to hamper and impede effective analytics usage. So does rational and balanced regulation in some of the most advanced economies. We expect more regulation and better guidelines in 2012.

Cloud Computing by Windows , Amazon and Google for free

Some ways to test and use cloud computing for free for yourself-

  1. Windows Azure
  2. Amazon Ec2
  3. Google Storage

The folks at Microsoft Azure announced a 90 day free trial Continue reading “Cloud Computing by Windows , Amazon and Google for free”

Windows Azure and Amazon Free offer

Simple Cpu Cache Memory Organization
Image via Wikipedia

For Hi-Computing folks try out Azure for free-

http://www.microsoft.com/windowsazure/offers/popup/popup.aspx?lang=en&locale=en-US&offer=MS-AZR-0001P#compute

Windows Azure Platform
Introductory Special

This promotional offer enables you to try a limited amount of the Windows Azure platform at no charge. The subscription includes a base level of monthly compute hours, storage, data transfers, a SQL Azure database, Access Control transactions and Service Bus connections at no charge. Please note that any usage over this introductory base level will be charged at standard rates.

Included each month at no charge:

  • Windows Azure
    • 25 hours of a small compute instance
    • 500 MB of storage
    • 10,000 storage transactions
  • SQL Azure
    • 1GB Web Edition database (available for first 3 months only)
  • Windows Azure platform AppFabric
    • 100,000 Access Control transactions
    • 2 Service Bus connections
  • Data Transfers (per region)
    • 500 MB in
    • 500 MB out

Any monthly usage in excess of the above amounts will be charged at the standard rates. This introductory special will end on March 31, 2011 and all usage will then be charged at the standard rates.

Standard Rates:

Windows Azure

  • Compute*
    • Extra small instance**: $0.05 per hour
    • Small instance (default): $0.12 per hour
    • Medium instance: $0.24 per hour
    • Large instance: $0.48 per hour
    • Extra large instance: $0.96 per hour

 

http://aws.amazon.com/ec2/pricing/

Free Tier*

As part of AWS’s Free Usage Tier, new AWS customers can get started with Amazon EC2 for free. Upon sign-up, new AWScustomers receive the following EC2 services each month for one year:

  • 750 hours of EC2 running Linux/Unix Micro instance usage
  • 750 hours of Elastic Load Balancing plus 15 GB data processing
  • 10 GB of Amazon Elastic Block Storage (EBS) plus 1 million IOs, 1 GB snapshot storage, 10,000 snapshot Get Requests and 1,000 snapshot Put Requests
  • 15 GB of bandwidth in and 15 GB of bandwidth out aggregated across all AWS services

 

Paid Instances-

 

Standard On-Demand Instances Linux/UNIX Usage Windows Usage
Small (Default) $0.085 per hour $0.12 per hour
Large $0.34 per hour $0.48 per hour
Extra Large $0.68 per hour $0.96 per hour
Micro On-Demand Instances
Micro $0.02 per hour $0.03 per hour
High-Memory On-Demand Instances
Extra Large $0.50 per hour $0.62 per hour
Double Extra Large $1.00 per hour $1.24 per hour
Quadruple Extra Large $2.00 per hour $2.48 per hour
High-CPU On-Demand Instances
Medium $0.17 per hour $0.29 per hour
Extra Large $0.68 per hour $1.16 per hour
Cluster Compute Instances
Quadruple Extra Large $1.60 per hour N/A*
Cluster GPU Instances
Quadruple Extra Large $2.10 per hour N/A*
* Windows is not currently available for Cluster Compute or Cluster GPU Instances.

 

NOTE- Amazon Instance definitions differ slightly from Azure definitions

http://aws.amazon.com/ec2/instance-types/

Available Instance Types

Standard Instances

Instances of this family are well suited for most applications.

Small Instance – default*

1.7 GB memory
1 EC2 Compute Unit (1 virtual core with 1 EC2 Compute Unit)
160 GB instance storage
32-bit platform
I/O Performance: Moderate
API name: m1.small

Large Instance

7.5 GB memory
4 EC2 Compute Units (2 virtual cores with 2 EC2 Compute Units each)
850 GB instance storage
64-bit platform
I/O Performance: High
API name: m1.large

Extra Large Instance

15 GB memory
8 EC2 Compute Units (4 virtual cores with 2 EC2 Compute Units each)
1,690 GB instance storage
64-bit platform
I/O Performance: High
API name: m1.xlarge

Micro Instances

Instances of this family provide a small amount of consistent CPU resources and allow you to burst CPU capacity when additional cycles are available. They are well suited for lower throughput applications and web sites that consume significant compute cycles periodically.

Micro Instance

613 MB memory
Up to 2 EC2 Compute Units (for short periodic bursts)
EBS storage only
32-bit or 64-bit platform
I/O Performance: Low
API name: t1.micro

High-Memory Instances

Instances of this family offer large memory sizes for high throughput applications, including database and memory caching applications.

High-Memory Extra Large Instance

17.1 GB of memory
6.5 EC2 Compute Units (2 virtual cores with 3.25 EC2 Compute Units each)
420 GB of instance storage
64-bit platform
I/O Performance: Moderate
API name: m2.xlarge

High-Memory Double Extra Large Instance

34.2 GB of memory
13 EC2 Compute Units (4 virtual cores with 3.25 EC2 Compute Units each)
850 GB of instance storage
64-bit platform
I/O Performance: High
API name: m2.2xlarge

High-Memory Quadruple Extra Large Instance

68.4 GB of memory
26 EC2 Compute Units (8 virtual cores with 3.25 EC2 Compute Units each)
1690 GB of instance storage
64-bit platform
I/O Performance: High
API name: m2.4xlarge

High-CPU Instances

Instances of this family have proportionally more CPU resources than memory (RAM) and are well suited for compute-intensive applications.

High-CPU Medium Instance

1.7 GB of memory
5 EC2 Compute Units (2 virtual cores with 2.5 EC2 Compute Units each)
350 GB of instance storage
32-bit platform
I/O Performance: Moderate
API name: c1.medium

High-CPU Extra Large Instance

7 GB of memory
20 EC2 Compute Units (8 virtual cores with 2.5 EC2 Compute Units each)
1690 GB of instance storage
64-bit platform
I/O Performance: High
API name: c1.xlarge

Cluster Compute Instances

Instances of this family provide proportionally high CPU resources with increased network performance and are well suited for High Performance Compute (HPC) applications and other demanding network-bound applications. Learn more about use of this instance type for HPC applications.

Cluster Compute Quadruple Extra Large Instance

23 GB of memory
33.5 EC2 Compute Units (2 x Intel Xeon X5570, quad-core “Nehalem” architecture)
1690 GB of instance storage
64-bit platform
I/O Performance: Very High (10 Gigabit Ethernet)
API name: cc1.4xlarge

Cluster GPU Instances

Instances of this family provide general-purpose graphics processing units (GPUs) with proportionally high CPU and increased network performance for applications benefitting from highly parallelized processing, including HPC, rendering and media processing applications. While Cluster Compute Instances provide the ability to create clusters of instances connected by a low latency, high throughput network, Cluster GPU Instances provide an additional option for applications that can benefit from the efficiency gains of the parallel computing power of GPUs over what can be achieved with traditional processors. Learn moreabout use of this instance type for HPC applications.

Cluster GPU Quadruple Extra Large Instance

22 GB of memory
33.5 EC2 Compute Units (2 x Intel Xeon X5570, quad-core “Nehalem” architecture)
2 x NVIDIA Tesla “Fermi” M2050 GPUs
1690 GB of instance storage
64-bit platform
I/O Performance: Very High (10 Gigabit Ethernet)
API name: cg1.4xlarge

versus-

Windows Azure compute instances come in five unique sizes to enable complex applications and workloads.

Compute Instance Size CPU Memory Instance Storage I/O Performance
Extra Small 1 GHz 768 MB 20 GB* Low
Small 1.6 GHz 1.75 GB 225 GB Moderate
Medium 2 x 1.6 GHz 3.5 GB 490 GB High
Large 4 x 1.6 GHz 7 GB 1,000 GB High
Extra large 8 x 1.6 GHz 14 GB 2,040 GB High

*There is a limitation on the Virtual Hard Drive (VHD) size if you are deploying a Virtual Machine role on an extra small instance. The VHD can only be up to 15 GB.

 

 

The Year 2010

Nokia N800 internet tablet, with open source s...
Image via Wikipedia

My annual traffic to this blog was almost 99,000 . Add in additional views on networking sites plus the 400 plus RSS readers- so I can say traffic was 1,20,000 for 2010. Nice. Thanks for reading and hope it was worth your time. (this is a long post and will take almost 440 secs to read but the summary is just given)

My intent is either to inform you, give something useful or atleast something interesting.

see below-

Jan Feb Mar Apr May Jun
2010 6,311 4,701 4,922 5,463 6,493 4,271
Jul Aug Sep Oct Nov Dec Total
5,041 5,403 17,913 16,430 11,723 10,096 98,767

 

 

Sandro Saita from http://www.dataminingblog.com/ just named me for an award on his blog (but my surname is ohRi , Sandro left me without an R- What would I be without R :)) ).

Aw! I am touched. Google for “Data Mining Blog” and Sandro is the best that it is in data mining writing.

DMR People Award 2010
There are a lot of active people in the field of data mining. You can discuss with them on forums. You can read their blogs. You can also meet them in events such as PAW or KDD. Among the people I follow on a regular basis, I have elected:

Ajay Ori

He has been very active in 2010, especially on his blog . Good work Ajay and continue sharing your experience with us!”

What did I write in 2010- stuff.

What did you read on this blog- well thats the top posts list.

2009-12-31 to Today

Title Views
Home page More stats 21,150
Top 10 Graphical User Interfaces in Statistical Software More stats 6,237
Wealth = function (numeracy, memory recall) More stats 2,014
Matlab-Mathematica-R and GPU Computing More stats 1,946
The Top Statistical Softwares (GUI) More stats 1,405
About DecisionStats More stats 1,352
Using Facebook Analytics (Updated) More stats 1,313
Test drive a Chrome notebook. More stats 1,170
Top ten RRReasons R is bad for you ? More stats 1,157
Libre Office More stats 1,151
Interview Hadley Wickham R Project Data Visualization Guru More stats 1,007
Using Red R- R with a Visual Interface More stats 854
SAS Institute files first lawsuit against WPS- Episode 1 More stats 790
Interview Professor John Fox Creator R Commander More stats 764
R Package Creating More stats 754
Windows Azure vs Amazon EC2 (and Google Storage) More stats 726
Norman Nie: R GUI and More More stats 716
Startups for Geeks More stats 682
Google Maps – Jet Ski across Pacific Ocean More stats 670
Not so AWkward after all: R GUI RKWard More stats 579
Red R 1.8- Pretty GUI More stats 570
Parallel Programming using R in Windows More stats 569
R is an epic fail or is it just overhyped More stats 559
Enterprise Linux rises rapidly:New Report More stats 537
Rapid Miner- R Extension More stats 518
Creating a Blog Aggregator for free More stats 504
So which software is the best analytical software? Sigh- It depends More stats 473
Revolution R for Linux More stats 465
John Sall sets JMP 9 free to tango with R More stats 460

So how do people come here –

well I guess I owe Tal G for almost 9000 views ( incidentally I withdrew posting my blog from R- Bloggers and Analyticbridge blogs – due to SEO keyword reasons and some spam I was getting see (below))

http://r-bloggers.com is still the CAT’s whiskers and I read it  a lot.

I still dont know who linked my blog to a free sex movie site with 400 views but I have a few suspects.

2009-12-31 to Today

Referrer Views
r-bloggers.com 9,131
Reddit 3,829
rattle.togaware.com 1,500
Twitter 1,254
Google Reader 1,215
linkedin.com 717
freesexmovie.irwanaf.com 422
analyticbridge.com 341
Google 327
coolavenues.com 322
Facebook 317
kdnuggets.com 298
dataminingblog.com 278
en.wordpress.com 185
google.co.in 151
xianblog.wordpress.com 130
inside-r.org 124
decisionstats.com 119
ifreestores.com 117
bits.blogs.nytimes.com 108

Still reading this post- gosh let me sell you some advertising. It is only $100 a month (yes its a recession)

Advertisers are treated on First in -Last out (FILO)

I have been told I am obsessed with SEO , but I dont care much for search engines apart from Google, and yes SEO is an interesting science (they should really re name it GEO or Google Engine Optimization)

Apparently Hadley Wickham and Donald Farmer are big keywords for me so I should be more respectful I guess.

Search Terms for 365 days ending 2010-12-31 (Summarized)

2009-12-31 to Today

Search Views
libre office 925
facebook analytics 798
test drive a chrome notebook 467
test drive a chrome notebook. 215
r gui 203
data mining 163
wps sas lawsuit 158
wordle.net 133
wps sas 123
google maps jet ski 123
test drive chrome notebook 96
sas wps 89
sas wps lawsuit 85
chrome notebook test drive 83
decision stats 83
best statistics software 74
hadley wickham 72
google maps jetski 72
libreoffice 70
doug savage 65
hive tutorial 58
funny india 56
spss certification 52
donald farmer microsoft 51
best statistical software 49

What about outgoing links? Apparently I need to find a way to ask Google to pay me for the free advertising I gave their chrome notebook launch. But since their search engine and browser is free to me, guess we are even steven.

Clicks for 365 days ending 2010-12-31 (Summarized)

2009-12-31 to Today

URL Clicks
rattle.togaware.com 378
facebook.com/Decisionstats 355
rapid-i.com/content/view/182/196 319
services.google.com/fb/forms/cr48basic 313
red-r.org 228
decisionstats.wordpress.com/2010/05/07/the-top-statistical-softwares-gui 199
teamwpc.co.uk/products/wps 162
r4stats.com/popularity 148
r-statistics.com/2010/04/r-and-the-google-summer-of-code-2010-accepted-students-and-projects 138
socserv.mcmaster.ca/jfox/Misc/Rcmdr 138
spss.com/certification 116
learnr.wordpress.com 114
dudeofdata.com/decisionstats 108
r-project.org 107
documentfoundation.org/faq 104
goo.gl/maps/UISY 100
inside-r.org/download 96
en.wikibooks.org/wiki/R_Programming 92
nytimes.com/external/readwriteweb/2010/12/07/07readwriteweb-report-google-offering-chrome-notebook-test-11919.html 92
sourceforge.net/apps/mediawiki/rkward/index.php?title=Main_Page 92
analyticdroid.togaware.com 88
yeroon.net/ggplot2 87

so in 2010,

SAS remained top daddy in business analytics,

R made revolutionary strides in terms of new packages,

JMP  launched a new version,

SPSS got integrated with Cognos,

Oracle sued Google and did build a great Data Mining GUI,

Libre Office gave you a non Oracle Open office ( or open even more office)

2011 looks like  a fun year. Have safe partying .