Moving data between Windows and Ubuntu VMWare partition

I use Windows 7 on my laptop (it came pre-installed) and Ubuntu using the VMWare Player. What are the advantages of using VM Player instead of creating a dual-boot system? Well I can quickly shift from Ubuntu to Windows and bakc again without restarting my computer everytime. Using this approach allows me to utilize software that run only on Windows and run software like Rattle, the R data mining GUI, that are much easier installed on Linux.

However if your statistical software is on your Virtual Disk , and your data is on your Windows disk, you need a way to move data from Windows to Ubuntu.

The solution to this as per Ubuntu forums is –http://communities.vmware.com/thread/55242

Open My Computer, browse to the folder you want to share.  Right-click on the folder, select Properties.  Sharing tab.  Select the radio button to “Share this Folder”.  Change the default generated name if you wish; add a description if you wish.  Click the Permissions button to modify the security settings of what users can read/write to the share.

On the Linux side, it depends on the distro, the shell, and the window manager.

Well Ubuntu makes it really easy to configure the Linux steps to move data within Windows and Linux partitions.

 

NEW UPDATE-

VMmare makes it easy to share between your Windows (host) and Linux (guest) OS

 

Step 1

and step 2

Do this

 

and

Start the Wizard

when you finish the wizard and share a drive or folder- hey where do I see my shared ones-

 

see this folder in Linux- /mnt/hgfs (bingo!)

Hacker HW – Make this folder //mnt/hgfs a shortcut in Places your Ubuntu startup

Hacker Hw 2-

Upload using an anon email your VM dark data to Ubuntu one

Delete VM

Purge using software XX

Reinstall VM and bring back backup

 

Note time to do this

 

 

 

-General Sharing in Windows

 

 

Just open the Network tab in Ubuntu- see screenshots below-

Windows will now ask your Ubuntu user for login-

Once Logged in Windows from within Ubuntu Vmware, this is what happens

You see a tab called “users on “windows username”- pc appear on your Ubuntu Desktop  (see top right of the screenshot)

If you double click it- you see your windows path

You can now just click and drag data between your windows and linux partitions , just the way you do it in Windows .

So based on this- if you want to build  decision trees, artifical neural networks, regression models, and even time series models for zero capital expenditure- you can use both Ubuntu/R without compromising on your IT policy of Windows only in your organization (there is a shortage of Ubuntu trained IT administrators in the enterprise world)

Revised Installation Procedure for utilizing both Ubuntu /R/Rattle data mining on your Windows PC.

Using VMWare to build a free data mining system in R, as well as isolate your analytics system (thus using both Linux and Windows without overburdening your machine)

First Time

  1. http://downloads.vmware.com/d/info/desktop_end_user_computing/vmware_player/4_0Download and Install
  2. http://www.ubuntu.com/download/ubuntu/downloadDownload Only
  3. Create New Virtual Image in VM Ware Player
  4. Applications—–Terminal——sudo apt get-install R (to download and install)
  5.                                          sudo R (to open R)
  6. Once R is opened type this  —-install.packages(rattle)—– This will install rattle
  7. library(rattle) will load Rattle—–
  8. rattle() will open the GUI—-
Getting Data from Host to Guest VM
Next Time
  1. Go to VM Player
  2. Open the VM
  3. sudo R in terminal to bring up R
  4. library(rattle) within R
  5. rattle()
At this point even if you dont know any Linux and dont know any R, you can create data mining models using the Rattle GUI (and time series model using E pack in the R Commander GUI) – What can Rattle do in data mining? See this slideshow-http://www.decisionstats.com/data-mining-with-r-gui-rattle-rstats/
If Google Docs is banned as per your enterprise organizational IT policy of having Windows Explorer only- well you can see these screenshots http://rattle.togaware.com/rattle-screenshots.html

Oracle adds R to Big Data Appliance -Use #Rstats

From the press release, Oracle gets on R and me too- NoSQL

http://www.oracle.com/us/corporate/press/512001

The Oracle Big Data Appliance is a new engineered system that includes an open source distribution of Apache™ Hadoop™, Oracle NoSQL Database, Oracle Data Integrator Application Adapter for Hadoop, Oracle Loader for Hadoop, and an open source distribution of R.

From

http://www.theregister.co.uk/2011/10/03/oracle_big_data_appliance/

the Big Data Appliance also includes the R programming language, a popular open source statistical-analysis tool. This R engine will integrate with 11g R2, so presumably if you want to do statistical analysis on unstructured data stored in and chewed by Hadoop, you will have to move it to Oracle after the chewing has subsided.

This approach to R-Hadoop integration is different from that announced last week between Revolution Analytics, the so-called Red Hat for stats that is extending and commercializing the R language and its engine, and Cloudera, which sells a commercial Hadoop setup called CDH3 and which was one of the early companies to offer support for Hadoop. Both Revolution Analytics and Cloudera now have Oracle as their competitor, which was no doubt no surprise to either.

In any event, the way they do it, the R engine is put on each node in the Hadoop cluster, and those R engines just see the Hadoop data as a native format that they can do analysis on individually. As statisticians do analyses on data sets, the summary data from all the nodes in the Hadoop cluster is sent back to their R workstations; they have no idea that they are using MapReduce on unstructured data.

Oracle did not supply configuration and pricing information for the Big Data Appliance, and also did not say when it would be for sale or shipping to customers

From

http://www.oracle.com/us/corporate/features/feature-oracle-nosql-database-505146.html

A Horizontally Scaled, Key-Value Database for the Enterprise
Oracle NoSQL Database is a commercial grade, general-purpose NoSQL database using a key/value paradigm. It allows you to manage massive quantities of data, cope with changing data formats, and submit simple queries. Complex queries are supported using Hadoop or Oracle Database operating upon Oracle NoSQL Database data.

Oracle NoSQL Database delivers scalable throughput with bounded latency, easy administration, and a simple programming model. It scales horizontally to hundreds of nodes with high availability and transparent load balancing. Customers might choose Oracle NoSQL Database to support Web applications, acquire sensor data, scale authentication services, or support online serves and social media.

and

from

http://siliconangle.com/blog/2011/09/30/oracle-adopting-open-source-r-to-connect-legacy-systems/

Oracle says it will integrate R with its Oracle Database. Other signs from Oracle show the deeper interest in using the statistical framework for integration with Hadoop to potentially speed statistical analysis. This has particular value with analyzing vast amounts of unstructured data, which has overwhelmed organizations, especially over the past year.

and

from

http://www.oracle.com/us/corporate/features/features-oracle-r-enterprise-498732.html

Oracle R Enterprise

Integrates the Open-Source Statistical Environment R with Oracle Database 11g
Oracle R Enterprise allows analysts and statisticians to run existing R applications and use the R client directly against data stored in Oracle Database 11g—vastly increasing scalability, performance and security. The combination of Oracle Database 11g and R delivers an enterprise-ready, deeply integrated environment for advanced analytics. Users can also use analytical sandboxes, where they can analyze data and develop R scripts for deployment while results stay managed inside Oracle Database.

Building a Regression Model in R – Use #Rstats

One of the most commonly used uses of Statistical Software is building models, and that too logistic regression models for propensity in marketing of goods and services.

 

If building a model is what you do-here is a brief easy essay on  how to build a model in R.

1) Packages to be used-

For smaller datasets

use these

  1. CAR Package http://cran.r-project.org/web/packages/car/index.html
  2. GVLMA Package http://cran.r-project.org/web/packages/gvlma/index.html
  3. ROCR Package http://rocr.bioinf.mpi-sb.mpg.de/
  4. Relaimpo Package
  5. DAAG package
  6. MASS package
  7. Bootstrap package
  8. Leaps package

Also see

http://cran.r-project.org/web/packages/rms/index.html or RMS package

rms works with almost any regression model, but it was especially written to work with binary or ordinal logistic regression, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, generalized least squares for serially or spatially correlated observations, generalized linear models, and quantile regression.

For bigger datasets also see Biglm http://cran.r-project.org/web/packages/biglm/index.html and RevoScaleR packages.

http://www.revolutionanalytics.com/products/enterprise-big-data.php

2) Syntax

  1. outp=lm(y~x1+x2+xn,data=dataset) Model Eq
  2. summary(outp) Model Summary
  3. par(mfrow=c(2,2)) + plot(outp) Model Graphs
  4. vif(outp) MultiCollinearity
  5. gvlma(outp) Heteroscedasticity using GVLMA package
  6. outlierTest (outp) for Outliers
  7. predicted(outp) Scoring dataset with scores
  8. anova(outp)
  9. > predict(lm.result,data.frame(conc = newconc), level = 0.9, interval = “confidence”)

 

For a Reference Card -Cheat Sheet see

http://cran.r-project.org/doc/contrib/Ricci-refcard-regression.pdf

3) Also read-

http://cran.r-project.org/web/views/Econometrics.html

http://cran.r-project.org/web/views/Robust.html

 

Use R for Business- Competition worth $ 20,000 #rstats

All you contest junkies, R lovers and general change the world people, here’s a new contest to use R in a business application

http://www.revolutionanalytics.com/news-events/news-room/2011/revolution-analytics-launches-applications-of-r-in-business-contest.php

REVOLUTION ANALYTICS LAUNCHES “APPLICATIONS OF R IN BUSINESS” CONTEST

$20,000 in Prizes for Users Solving Business Problems with R

 

PALO ALTO, Calif. – September 1, 2011 – Revolution Analytics, the leading commercial provider of R software, services and support, today announced the launch of its “Applications of R in Business” contest to demonstrate real-world uses of applying R to business problems. The competition is open to all R users worldwide and submissions will be accepted through October 31. The Grand Prize winner for the best application using R or Revolution R will receive $10,000.

The bonus-prize winner for the best application using features unique to Revolution R Enterprise – such as itsbig-data analytics capabilities or its Web Services API for R – will receive $5,000. A panel of independent judges drawn from the R and business community will select the grand and bonus prize winners. Revolution Analytics will present five honorable mention prize winners each with $1,000.

“We’ve designed this contest to highlight the most interesting use cases of applying R and Revolution R to solving key business problems, such as Big Data,” said Jeff Erhardt, COO of Revolution Analytics. “The ability to process higher-volume datasets will continue to be a critical need and we encourage the submission of applications using large datasets. Our goal is to grow the collection of online materials describing how to use R for business applications so our customers can better leverage Big Analytics to meet their analytical and organizational needs.”

To enter Revolution Analytics’ “Applications of R in Business” competition Continue reading “Use R for Business- Competition worth $ 20,000 #rstats”

Google Plus API- statistical text mining anyone

For the past year and two I have noticed a lot of statistical analysis using #rstats /R on unstructured text generated in real time by the social network Twitter. From an analytic point of view , Google Plus is an interesting social network , as it is a social network that is new and arrived after the analytic tools are relatively refined. It is thus an interesting use case for evolution of people behavior measured globally AFTER analytic tools in text mining are evolved and we can thus measure how people behave and that behavior varies as the social network and its user interface evolves.

And it would also be  a nice benchmark to do sentiment analysis across multiple social networks.

Some interesting use cases of using Twitter that have been used in R.

  • Using R to search Twitter for analysis
http://www.franklincenterhq.org/2429/using-r-to-search-twitter-for-analysis/
  • Text Data Mining With Twitter And R
  • TWITTER FROM R… SURE, WHY NOT!
  • A package called TwitteR
  • slides from my R tutorial on Twitter text mining #rstats
  • Generating graphs of retweets and @-messages on Twitter using R and Gephi
But with Google Plus API now active

The Console lets you see and manage the following project information:

  • Activated APIs – Activate one or more APIs to enable traffic monitoring, filtering, and billing, and API-specific pages for your project. Read more about activating APIs here.
  • Traffic information – The Console reports traffic information for each activated API. Additionally, you can cap or filter usage by API. Read more about traffic reporting and request filtering here.
  • Billing information – When you activate billing, your activated APIs can exceed the courtesy usage quota. Usage fees are billed to the Google Checkout account that you specify. Read more about billing here.
  • Project keys – Each project is identified by either an API key or an OAuth 2.0 token. Use this key/token in your API requests to identify the project, in order to record usage data, enforce your filtering restrictions, and bill usage to the proper project. You can use the Console to generate or revoke API keys or OAuth 2.0 certificates to use in your application. Read more about keys here.
  • Team members – You can specify additional members with read, write, or ownership access to this project’s Console page. Read more about team members here.
Google+ API Courtesy limit: 1,000 queries/day

Effective limits:

API Per-User Limit Used Courtesy Limit
Google+ API 5.0 requests/second/user 0% 1,000 queries/day
API Calls
Most of the Google+ API follows a RESTful API design, meaning that you use standard HTTP methods to retrieve and manipulate resources. For example, to get the profile of a user, you might send an HTTP request like:

GET https://www.googleapis.com/plus/v1/people/userId

Common Parameters

Different API methods require parameters to be passed either as part of the URL path or as query parameters. Additionally, there are a few parameters that are common to all API endpoints. These are all passed as optional query parameters.

Parameter Name

Value

Description

callback

string

Specifies a JavaScript function that will be passed the response data for using the API with JSONP.

fields

string

Selector specifying which fields to include in a partial response.

key

string

API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.

access_token

string

OAuth 2.0 token for the current user. Learn more about OAuth.

prettyPrint

boolean

If set to “true”, data output will include line breaks and indentation to make it more readable. If set to “false”, unnecessary whitespace is removed, reducing the size of the response. Defaults to “true”.

userIp

string

Identifies the IP address of the end user for whom the API call is being made. This allows per-user quotas to be enforced when calling the API from a server-side application. Learn more about Capping Usage.

Data Formats

Resources in the Google+ API are represented using JSON data formats. For example, retrieving a user’s profile may result in a response like:

{
  "kind": "plus#person",
  "id": "118051310819094153327",
  "displayName": "Chirag Shah",
  "url": "https://plus.google.com/118051310819094153327",
  "image": {
    "url": "https://lh5.googleusercontent.com/-XnZDEoiF09Y/AAAAAAAAAAI/AAAAAAAAYCI/7fow4a2UTMU/photo.jpg"
  }
}

Common Properties

While each type of resource will have its own unique representation, there are a number of common properties that are found in almost all resource representations.

Property Name

Value

Description

displayName

string

This is the name of the resource, suitable for displaying to a user.

id

string

This property uniquely identifies a resource. Every resource of a given kind will have a unique id. Even though an id may sometimes look like a number, it should always be treated as a string.

kind

string

This identifies what kind of resource a JSON object represents. This is particularly useful when programmatically determining how to parse an unknown object.

url

string

This is the primary URL, or permalink, for the resource.

Pagination

In requests that can respond with potentially large collections, such as Activities list, each response contains a limited number of items, set by maxResults(default: 20). Each response also contains a nextPageToken property. To obtain the next page of items, you pass this value of nextPageToken to the pageTokenproperty of the next request. Repeat this process to page through the full collection.

For example, calling Activities list returns a response with nextPageToken:

{
  "kind": "plus#activityFeed",
  "title": "Plus Public Activities Feed",
  "nextPageToken": "CKaEL",
  "items": [
    {
      "kind": "plus#activity",
      "id": "123456789",
      ...
    },
    ...
  ]
  ...
}

To get the next page of activities, pass the value of this token in with your next Activities list request:

https://www.googleapis.com/plus/v1/people/me/activities/public?pageToken=CKaEL

As before, the response to this request includes nextPageToken, which you can pass in to get the next page of results. You can continue this cycle to get new pages — for the last page, “nextPageToken” will be absent.

 

it would be interesting the first wave of analysis on this new social network and see if it is any different from others, if at all.
After all, an API is only as good as the analysis and applications  that can be done on the data it provides

 

Cloud Computing using Python

I liked the new features in PiCloud , which is a cloud computing way to use Python. Python is increasingly popular as a computational language, and the cloud is the way where HW is headed to atleast as of 2011-12

http://www.picloud.com/

The new features allows you to publish your own functions as urls.

 By publishing your Python functions to URLs. Why would you want to publish a function?

  • To call your Python functions from a programming language other than Python.
  • To use PiCloud from Google AppEngine, which does not support our native client library.
  • To easily setup a scalable RPC system.

Here’s a peek at the interface:

You publish a Python function

cloud.rest.publish(your_func, ‘myfunction’)

We give you a URL Back

https://api.picloud.com/r/2/myfunction/

You make an HTTP request using your method of choice to the URL

curl -k -u ‘key:secret_key’ https://api.picloud.com/r/2/myfunction/

It certainly is an interesting development and I am wondering how other languages can adopt this paradigm as well.
For R, as of now http://www.cloudnumbers.com/ seems to be the only player in the cloud.
It would be exciting to see more players in the cloud statistical analytical space.

 

Interview Dan Steinberg Founder Salford Systems

Here is an interview with Dan Steinberg, Founder and President of Salford Systems (http://www.salford-systems.com/ )

Ajay- Describe your journey from academia to technology entrepreneurship. What are the key milestones or turning points that you remember.

 Dan- When I was in graduate school studying econometrics at Harvard,  a number of distinguished professors at Harvard (and MIT) were actively involved in substantial real world activities.  Professors that I interacted with, or studied with, or whose software I used became involved in the creation of such companies as Sun Microsystems, Data Resources, Inc. or were heavily involved in business consulting through their own companies or other influential consultants.  Some not involved in private sector consulting took on substantial roles in government such as membership on the President’s Council of Economic Advisors. The atmosphere was one that encouraged free movement between academia and the private sector so the idea of forming a consulting and software company was quite natural and did not seem in any way inconsistent with being devoted to the advancement of science.

 Ajay- What are the latest products by Salford Systems? Any future product plans or modification to work on Big Data analytics, mobile computing and cloud computing.

 Dan- Our central set of data mining technologies are CART, MARS, TreeNet, RandomForests, and PRIM, and we have always maintained feature rich logistic regression and linear regression modules. In our latest release scheduled for January 2012 we will be including a new data mining approach to linear and logistic regression allowing for the rapid processing of massive numbers of predictors (e.g., one million columns), with powerful predictor selection and coefficient shrinkage. The new methods allow not only classic techniques such as ridge and lasso regression, but also sub-lasso model sizes. Clear tradeoff diagrams between model complexity (number of predictors) and predictive accuracy allow the modeler to select an ideal balance suitable for their requirements.

The new version of our data mining suite, Salford Predictive Modeler (SPM), also includes two important extensions to the boosted tree technology at the heart of TreeNet.  The first, Importance Sampled learning Ensembles (ISLE), is used for the compression of TreeNet tree ensembles. Starting with, say, a 1,000 tree ensemble, the ISLE compression might well reduce this down to 200 reweighted trees. Such compression will be valuable when models need to be executed in real time. The compression rate is always under the modeler’s control, meaning that if a deployed model may only contain, say, 30 trees, then the compression will deliver an optimal 30-tree weighted ensemble. Needless to say, compression of tree ensembles should be expected to be lossy and how much accuracy is lost when extreme compression is desired will vary from case to case. Prior to ISLE, practitioners have simply truncated the ensemble to the maximum allowable size.  The new methodology will substantially outperform truncation.

The second major advance is RULEFIT, a rule extraction engine that starts with a TreeNet model and decomposes it into the most interesting and predictive rules. RULEFIT is also a tree ensemble post-processor and offers the possibility of improving on the original TreeNet predictive performance. One can think of the rule extraction as an alternative way to explain and interpret an otherwise complex multi-tree model. The rules extracted are similar conceptually to the terminal nodes of a CART tree but the various rules will not refer to mutually exclusive regions of the data.

 Ajay- You have led teams that have won multiple data mining competitions. What are some of your favorite techniques or approaches to a data mining problem.

 Dan- We only enter competitions involving problems for which our technology is suitable, generally, classification and regression. In these areas, we are  partial to TreeNet because it is such a capable and robust learning machine. However, we always find great value in analyzing many aspects of a data set with CART, especially when we require a compact and easy to understand story about the data. CART is exceptionally well suited to the discovery of errors in data, often revealing errors created by the competition organizers themselves. More than once, our reports of data problems have been responsible for the competition organizer’s decision to issue a corrected version of the data and we have been the only group to discover the problem.

In general, tackling a data mining competition is no different than tackling any analytical challenge. You must start with a solid conceptual grasp of the problem and the actual objectives, and the nature and limitations of the data. Following that comes feature extraction, the selection of a modeling strategy (or strategies), and then extensive experimentation to learn what works best.

 Ajay- I know you have created your own software. But are there other software that you use or liked to use?

 Dan- For analytics we frequently test open source software to make sure that our tools will in fact deliver the superior performance we advertise. In general, if a problem clearly requires technology other than that offered by Salford, we advise clients to seek other consultants expert in that other technology.

 Ajay- Your software is installed at 3500 sites including 400 universities as per http://www.salford-systems.com/company/aboutus/index.html What is the key to managing and keeping so many customers happy?

 Dan- First, we have taken great pains to make our software reliable and we make every effort  to avoid problems related to bugs.  Our testing procedures are extensive and we have experts dedicated to stress-testing software . Second, our interface is designed to be natural, intuitive, and easy to use, so the challenges to the new user are minimized. Also, clear documentation, help files, and training videos round out how we allow the user to look after themselves. Should a client need to contact us we try to achieve 24-hour turn around on tech support issues and monitor all tech support activity to ensure timeliness, accuracy, and helpfulness of our responses. WebEx/GotoMeeting and other internet based contact permit real time interaction.

 Ajay- What do you do to relax and unwind?

 Dan- I am in the gym almost every day combining weight and cardio training. No matter how tired I am before the workout I always come out energized so locating a good gym during my extensive travels is a must. I am also actively learning Portuguese so I look to watch a Brazilian TV show or Portuguese dubbed movie when I have time; I almost never watch any form of video unless it is available in Portuguese.

 Biography-

http://www.salford-systems.com/blog/dan-steinberg.html

Dan Steinberg, President and Founder of Salford Systems, is a well-respected member of the statistics and econometrics communities. In 1992, he developed the first PC-based implementation of the original CART procedure, working in concert with Leo Breiman, Richard Olshen, Charles Stone and Jerome Friedman. In addition, he has provided consulting services on a number of biomedical and market research projects, which have sparked further innovations in the CART program and methodology.

Dr. Steinberg received his Ph.D. in Economics from Harvard University, and has given full day presentations on data mining for the American Marketing Association, the Direct Marketing Association and the American Statistical Association. After earning a PhD in Econometrics at Harvard Steinberg began his professional career as a Member of the Technical Staff at Bell Labs, Murray Hill, and then as Assistant Professor of Economics at the University of California, San Diego. A book he co-authored on Classification and Regression Trees was awarded the 1999 Nikkei Quality Control Literature Prize in Japan for excellence in statistical literature promoting the improvement of industrial quality control and management.

His consulting experience at Salford Systems has included complex modeling projects for major banks worldwide, including Citibank, Chase, American Express, Credit Suisse, and has included projects in Europe, Australia, New Zealand, Malaysia, Korea, Japan and Brazil. Steinberg led the teams that won first place awards in the KDDCup 2000, and the 2002 Duke/TeraData Churn modeling competition, and the teams that won awards in the PAKDD competitions of 2006 and 2007. He has published papers in economics, econometrics, computer science journals, and contributes actively to the ongoing research and development at Salford.