Awesome Case Study by PayPal/ Rapid Miner for Churn

I just saw this awesome case study of using Rapid Miner for predicting Churn in financial services (Paypal). I had been looking for simple yet exhaustive manuals/case studies on churn modeling and this is one the better ones I have seen. http://rapid-i.com/downloads/press/PayPalCaseStudyChurnRiskDetectionv1.1-web.pdf

 

Interview Rapid-I -Ingo Mierswa and Simon Fischer

Here is an interview with Dr Ingo Mierswa , CEO of Rapid -I and Dr Simon Fischer, Head R&D. Rapid-I makes the very popular software Rapid Miner – perhaps one of the earliest leading open source software in business analytics and business intelligence. It is quite easy to use, deploy and with it’s extensions and innovations (including compatibility with R )has continued to grow tremendously through the years.

In an extensive interview Ingo and Simon talk about algorithms marketplace, extensions , big data analytics, hadoop, mobile computing and use of the graphical user interface in analytics.

Special Thanks to Nadja from Rapid I communication team for helping coordinate this interview.( Statuary Blogging Disclosure- Rapid I is a marketing partner with Decisionstats as per the terms in https://decisionstats.com/privacy-3/)

Ajay- Describe your background in science. What are the key lessons that you have learnt while as scientific researcher and what advice would you give to new students today.

Ingo: My time as researcher really was a great experience which has influenced me a lot. I have worked at the AI lab of Prof. Dr. Katharina Morik, one of the persons who brought machine learning and data mining to Europe. Katharina always believed in what we are doing, encouraged us and gave us the space for trying out new things. Funnily enough, I never managed to use my own scientific results in any real-life project so far but I consider this as a quite common gap between science and the “real world”. At Rapid-I, however, we are still heavily connected to the scientific world and try to combine the best of both worlds: solving existing problems with leading-edge technologies.

Simon: In fact, during my academic career I have not worked in the field of data mining at all. I worked on a field some of my colleagues would probably even consider boring, and that is theoretical computer science. To be precise, my research was in the intersection of game theory and network theory. During that time, I have learnt a lot of exciting things, none of which had any business use. Still, I consider that a very valuable experience. When we at Rapid-I hire people coming to us right after graduating, I don’t care whether they know the latest technology with a fancy three-letter acronym – that will be forgotten more quickly than it came. What matters is the way you approach new problems and challenges. And that is also my recommendation to new students: work on whatever you like, as long as you are passionate about it and it brings you forward.

Ajay-  How is the Rapid Miner Extensions marketplace moving along. Do you think there is a scope for people to say create algorithms in a platform like R , and then offer that algorithm as an app for sale just like iTunes or Android apps.

 Simon: Well, of course it is not going to be exactly like iTunes or Android apps are, because of the more business-orientated character. But in fact there is a scope for that, yes. We have talked to several developers, e.g., at our user conference RCOMM, and several people would be interested in such an opportunity. Companies using data mining software need supported software packages, not just something they downloaded from some anonymous server, and that is only possible through a platform like the new Marketplace. Besides that, the marketplace will not only host commercial extensions. It is also meant to be a platform for all the developers that want to publish their extensions to a broader community and make them accessible in a comfortable way. Of course they could just place them on their personal Web pages, but who would find them there? From the Marketplace, they are installable with a single click.

Ingo: What I like most about the new Rapid-I Marketplace is the fact that people can now get something back for their efforts. Developing a new algorithm is a lot of work, in some cases even more that developing a nice app for your mobile phone. It is completely accepted that people buy apps from a store for a couple of Dollars and I foresee the same for sharing and selling algorithms instead of apps. Right now, people can already share algorithms and extensions for free, one of the next versions will also support selling of those contributions. Let’s see what’s happening next, maybe we will add the option to sell complete RapidMiner workflows or even some data pools…

Ajay- What are the recent features in Rapid Miner that support cloud computing, mobile computing and tablets. How do you think the landscape for Big Data (over 1 Tb ) is changing and how is Rapid Miner adapting to it.

Simon: These are areas we are very active in. For instance, we have an In-Database-Mining Extension that allows the user to run their modelling algorithms directly inside the database, without ever loading the data into memory. Using analytic databases like Vectorwise or Infobright, this technology can really boost performance. Our data mining server, RapidAnalytics, already offers functionality to send analysis processes into the cloud. In addition to that, we are currently preparing a research project dealing with data mining in the cloud. A second project is targeted towards the other aspect you mention: the use of mobile devices. This is certainly a growing market, of course not for designing and running analyses, but for inspecting reports and results. But even that is tricky: When you have a large screen you can display fancy and comprehensive interactive dashboards with drill downs and the like. On a mobile device, that does not work, so you must bring your reports and visualizations very much to the point. And this is precisely what data mining can do – and what is hard to do for classical BI.

Ingo: Then there is Radoop, which you may have heard of. It uses the Apache Hadoop framework for large-scale distributed computing to execute RapidMiner processes in the cloud. Radoop has been presented at this year’s RCOMM and people are really excited about the combination of RapidMiner with Hadoop and the scalability this brings.

 Ajay- Describe the Rapid Miner analytics certification program and what steps are you taking to partner with academic universities.

Ingo: The Rapid-I Certification Program was created to recognize professional users of RapidMiner or RapidAnalytics. The idea is that certified users have demonstrated a deep understanding of the data analysis software solutions provided by Rapid-I and how they are used in data analysis projects. Taking part in the Rapid-I Certification Program offers a lot of benefits for IT professionals as well as for employers: professionals can demonstrate their skills and employers can make sure that they hire qualified professionals. We started our certification program only about 6 months ago and until now about 100 professionals have been certified so far.

Simon: During our annual user conference, the RCOMM, we have plenty of opportunities to talk to people from academia. We’re also present at other conferences, e.g. at ECML/PKDD, and we are sponsoring data mining challenges and grants. We maintain strong ties with several universities all over Europe and the world, which is something that I would not want to miss. We are also cooperating with institutes like the ITB in Dublin during their training programmes, e.g. by giving lectures, etc. Also, we are leading or participating in several national or EU-funded research projects, so we are still close to academia. And we offer an academic discount on all our products 🙂

Ajay- Describe the global efforts in making Rapid Miner a truly international software including spread of developers, clients and employees.

Simon: Our clients already are very international. We have a partner network in America, Asia, and Australia, and, while I am responding to these questions, we have a training course in the US. Developers working on the core of RapidMiner and RapidAnalytics, however, are likely to stay in Germany for the foreseeable future. We need specialists for that, and it would be pointless to spread the development team over the globe. That is also owed to the agile philosophy that we are following.

Ingo: Simon is right, Rapid-I already is acting on an international level. Rapid-I now has more than 300 customers from 39 countries in the world which is a great result for a young company like ours. We are of course very strong in Germany and also the rest of Europe, but also concentrate on more countries by means of our very successful partner network. Rapid-I continues to build this partner network and to recruit dynamic and knowledgeable partners and in the future. However, extending and acting globally is definitely part of our strategic roadmap.

Biography

Dr. Ingo Mierswa is working as Chief Executive Officer (CEO) of Rapid-I. He has several years of experience in project management, human resources management, consulting, and leadership including eight years of coordinating and leading the multi-national RapidMiner developer team with about 30 developers and contributors world-wide. He wrote his Phd titled “Non-Convex and Multi-Objective Optimization for Numerical Feature Engineering and Data Mining” at the University of Dortmund under the supervision of Prof. Morik.

Dr. Simon Fischer is heading the research & development at Rapid-I. His interests include game theory and networks, the theory of evolutionary algorithms (e.g. on the Ising model), and theoretical and practical aspects of data mining. He wrote his PhD in Aachen where he worked in the project “Design and Analysis of Self-Regulating Protocols for Spectrum Assignment” within the excellence cluster UMIC. Before, he was working on the vtraffic project within the DFG Programme 1126 “Algorithms for large and complex networks”.

http://rapid-i.com/content/view/181/190/ tells you more on the various types of Rapid Miner licensing for enterprise, individual and developer versions.

(Note from Ajay- to receive an early edition invite to Radoop, click here http://radoop.eu/z1sxe)

 

Introducing Radoop

Thats Right- This is Radoop and it is

Hadoop meats Rapid Miner=Radoop

 

 

http://prezi.com/bin/preziloader.swf

http://prezi.com/dxx7m50le5hr/radoop-presentation-at-rcomm-2011/

 

Workflows and MyExperiment.org

Here is a great website for sharing workflows – it is called MyExperiment.org and it can also include Work flows from many software.

myExperiment currently has 4742 members270 groups1842 workflows423 files and 173 packs

Could it also include workflow from Red-R from #rstats or Enterprise Miner

Continue reading “Workflows and MyExperiment.org”

RapidMiner launches extensions marketplace

For some time now, I had been hoping for a place where new package or algorithm developers get at least a fraction of the money that iPad or iPhone application developers get. Rapid Miner has taken the lead in establishing a marketplace for extensions. Is there going to be paid extensions as well- I hope so!!

This probably makes it the first “app” marketplace in open source and the second app marketplace in analytics after salesforce.com

It is hard work to think of new algols, and some of them can really be usefull.

Can we hope for #rstats marketplace where people downloading say ggplot3.0 atleast get a prompt to donate 99 cents per download to Hadley Wickham’s Amazon wishlist. http://www.amazon.com/gp/registry/1Y65N3VFA613B

Do you think it is okay to pay 99 cents per iTunes song, but not pay a cent for open source software.

I dont know- but I am just a capitalist born in a country that was socialist for the first 13 years of my life. Congratulations once again to Rapid Miner for innovating and leading the way.

http://rapid-i.com/component/option,com_myblog/show,Rapid-I-Marketplace-Launched.html/Itemid,172

RapidMinerMarketplaceExtensions 30 May 2011
Rapid-I Marketplace Launched by Simon Fischer

Over the years, many of you have been developing new RapidMiner Extensions dedicated to a broad set of topics. Whereas these extensions are easy to install in RapidMiner – just download and place them in the plugins folder – the hard part is to find them in the vastness that is the Internet. Extensions made by ourselves at Rapid-I, on the other hand,  are distributed by the update server making them searchable and installable directly inside RapidMiner.

We thought that this was a bit unfair, so we decieded to open up the update server to the public, and not only this, we even gave it a new look and name. The Rapid-I Marketplace is available in beta mode at http://rapidupdate.de:8180/ . You can use the Web interface to browse, comment, and rate the extensions, and you can use the update functionality in RapidMiner by going to the preferences and entering http://rapidupdate.de:8180/UpdateServer/ as the update server URL. (Once the beta test is complete, we will change the port back to 80 so we won’t have any firewall problems.)

As an Extension developer, just register with the Marketplace and drop me an email (fischer at rapid-i dot com) so I can give you permissions to upload your own extension. Upload is simple provided you use the standard RapidMiner Extension build process and will boost visibility of your extension.

Looking forward to see many new extensions there soon!

Disclaimer- Decisionstats is a partner of Rapid Miner. I have been liking the software for a long long time, and recently agreed to partner with them just like I did with KXEN some years back, and with Predictive AnalyticsConference, and Aster Data until last year.

I still think Rapid Miner is a very very good software,and a globally created software after SAP.

Here is the actual marketplace

http://rapidupdate.de:8180/UpdateServer/faces/index.xhtml

Welcome to the Rapid-I Marketplace Public Beta Test

The Rapid-I Marketplace will soon replace the RapidMiner update server. Using this marketplace, you can share your RapidMiner extensions and make them available for download by the community of RapidMiner users. Currently, we are beta testing this server. If you want to use this server in RapidMiner, you must go to the preferences and enter http://rapidupdate.de:8180/UpdateServer for the update url. After the beta test, we will change the port back to 80, which is currently occupied by the old update server. You can test the marketplace as a user (downloading extensions) and as an Extension developer. If you want to publish your extension here, please let us know via the contact form.

Hot Downloads
«« « 1 2 3 » »»
[Icon]The Image Processing Extension provides operators for handling image data. You can extract attributes describing colour and texture in the image, you can make several transformation of a image data which allows you to perform segmentation and detection of suspicious areas in image data.The extension provides many of image transformation and extraction operators ranging from Wavelet Decomposition, Hough Circle to Block Difference of Inverse probabilities.

[Icon]RapidMiner is unquestionably the world-leading open-source system for data mining. It is available as a stand-alone application for data analysis and as a data mining engine for the integration into own products. Thousands of applications of RapidMiner in more than 40 countries give their users a competitive edge.

  • Data IntegrationAnalytical ETLData Analysis, and Reporting in one single suite
  • Powerful but intuitive graphical user interface for the design of analysis processes
  • Repositories for process, data and meta data handling
  • Only solution with meta data transformation: forget trial and error and inspect results already during design time
  • Only solution which supports on-the-fly error recognition and quick fixes
  • Complete and flexible: Hundreds of data loading, data transformation, data modeling, and data visualization methods
[Icon]All modeling methods and attribute evaluation methods from the Weka machine learning library are available within RapidMiner. After installing this extension you will get access to about 100 additional modelling schemes including additional decision trees, rule learners and regression estimators.This extension combines two of the most widely used open source data mining solutions. By installing it, you can extend RapidMiner to everything what is possible with Weka while keeping the full analysis, preprocessing, and visualization power of RapidMiner.

[Icon]Finally, the two most widely used data analysis solutions – RapidMiner and R – are connected. Arbitrary R models and scripts can now be directly integrated into the RapidMiner analysis processes. The new R perspective offers the known R console together with the great plotting facilities of R. All variables and R scripts can be organized in the RapidMiner Repository.A directly included online help and multi-line editing makes the creation of R scripts much more comfortable.

Interfaces to R

This is a fairly long post and is a basic collection  of material for a book/paper. It is on interfaces to use R. If you feel I need to add more on a  particular R interface, or if there is an error in this- please feel to contact me on twitter @decisionstats or mail ohri2007 on google mail.

R Interfaces

There are multiple ways to use the R statistical language.

Command Line- The default method is using the command prompt by the installed software on download from http://r-project.org
For windows users there is a simple GUI which has an option for Packages (loading package, installing package, setting CRAN mirror for downloading packages) , Misc (useful for listing all objects loaded in workspace as well as clearing objects to free up memory), and Help Menu.

Using Click and Point- Besides the command prompt, there are many Graphical User Interfaces which enable the analyst to use click and point methods to analyze data without getting into the details of learning complex and at times overwhelming R syntax. R GUIs are very popular both as mode of instruction in academia as well as in actual usage as it cuts down considerably on time taken to adapt to the language. As with all command line and GUI software, for advanced tweaks and techniques, command prompt will come in handy as well.

Advantages and Limitations of using Visual Programming Interfaces to R as compared to Command Line.

 

Advantages Limitations
Faster learning for new programmers Can create junk analysis by clicking menus in GUI
Easier creation of advanced models or graphics Cannot create custom functions unless you use command line
Repeatability of analysis is better Advanced techniques and custom flexibility of data handling R can be done in command line
Syntax is auto-generated Can limit scope and exposure in learning R syntax




A brief list of the notable Graphical User Interfaces is below-

1) R Commander- Basic statistics
2) Rattle- Data Mining
3) Deducer- Graphics (including GGPlot Integration) and also uses JGR (a Jave based  GUI)
4) RKward- Comprehensive R GUI for customizable graphs
5) Red-R – Dataflow programming interface using widgets

1) R Commander- R Commander was primarily created by Professor John Fox of McMaster University to cover the content of a basic statistics course. However it is extensible and many other packages can be added in menu form to it- in the form R Commander Plugins. Quite noticeably it is one of the most widely used R GUI and it also has a script window so you can write R code in combination with the menus.
As you point and click a particular menu item, the corresponding R code is automatically generated in the log window and executed.

It can be found on CRAN at http://cran.r-project.org/web/packages/Rcmdr/index.html



Advantages of Using  R Commander-
1) Useful for beginner in R language to do basic graphs and analysis and building models.
2) Has script window, output window and log window (called messages) in same screen which helps user as code is auto-generated on clicking on menus, and can be customized easily. For example in changing labels and options in Graphs.  Graphical output is shown in seperate window from output window.
3) Extensible for other R packages like qcc (for quality control), Teaching Demos (for training), survival analysis and Design of Experiments (DoE)
4) Easy to understand interface even for first time user.
5) Menu items which are not relevant are automatically greyed out- if there are only two variables, and you try to build a 3D scatterplot graph, that menu would simply not be available and is greyed out.

Comparative Disadvantages of using R Commander-
1) It is basically aimed at a statistical audience( originally students in statistics) and thus the terms as well as menus are accordingly labeled. Hence it is more of a statistical GUI rather than an analytics GUI.
2) Has limited ability to evaluate models from a business analysts perspective (ROC curve is not given as an option) even though it has extensive statistical tests for model evaluation in model sub menu. Indeed creating a Model is treated as a subsection of statistics rather than a separate menu item.
3) It is not suited for projects that do not involve advanced statistical testing and for users not proficient in statistics (particularly hypothesis testing), and for data miners.

Menu items in the R Commander window:
File Menu – For loading script files and saving Script files, Output and Workspace
It is also needed for changing the present working directory and for exiting R.
Edit Menu – For editing scripts and code in the script window.
Data Menu – For creating new dataset, inputting or importing data and manipulating data through variables. Data Import can be from text,comma separated values,clipboard, datasets from SPSS, Stata,Minitab, Excel ,dbase,  Access files or from url.
Data manipulation included deleting rows of data as well as manipulating variables.
Also this menu has the option for merging two datasets by row or columns.
Statistics Menu-This menu has options for descriptive statistics, hypothesis tests, factor analysis and clustering and also for creating models. Note there is a separate menu for evaluating the model so created.
Graphs Menu-It has options for creating various kinds of graphs including box-plot, histogram, line, pie charts and x-y plots.
The first option is color palette- it can be used for customizing the colors. It is recommended you adjust colors based on your need for publication or presentation.
A notable option is 3 D graphs for evaluating 3 variables at a time- this is really good and impressive feature and exposes the user to advanced graphs in R all at few clicks. You may want to dazzle a presentation using this graph.
Also consider scatterplot matrix graphs for graphical display of variables.
Graphical display of R surpasses any other statistical software in appeal as well as ease of creation- using GUI to create graphs can further help the user to get the most of data insights using R at a very minimum effort.
Models Menu-This is somewhat of a labeling peculiarity of R Commander as this menu is only for evaluating models which have been created using the statistics menu-model sub menu.
It includes options for graphical interpretation of model results,residuals,leverage and confidence intervals and adding back residuals to the data set.
Distributions Menu- is for cumulative probabilities, probability density, graphs of distributions, quantiles and features for standard distributions and can be used in lieu of standard statistical tables for the distributions. It has 13 standard statistical continuous distributions and 5 discrete distributions.
Tools Menu- allows you to load other packages and also load R Commander plugins (which are then added to the Interface Menu after the R Commander GUI is restarted). It also contains options sub menu for fine tuning (like opting to send output to R Menu)
Help Menu- Standard documentation and help menu. Essential reading is the short 25 page manual in it called Getting “Started With the R Commander”.

R Commander Plugins- There are twenty extensions to R Commander that greatly enhance it’s appeal -these include basic time series forecasting, survival analysis, qcc and more.

see a complete list at

  1. DoE – http://cran.r-project.org/web/packages/RcmdrPlugin.DoE/RcmdrPlugin.DoE.pdf
  2. doex
  3. EHESampling
  4. epack- http://cran.r-project.org/web/packages/RcmdrPlugin.epack/RcmdrPlugin.epack.pdf
  5. Export- http://cran.r-project.org/web/packages/RcmdrPlugin.Export/RcmdrPlugin.Export.pdf
  6. FactoMineR
  7. HH
  8. IPSUR
  9. MAc- http://cran.r-project.org/web/packages/RcmdrPlugin.MAc/RcmdrPlugin.MAc.pdf
  10. MAd
  11. orloca
  12. PT
  13. qcc- http://cran.r-project.org/web/packages/RcmdrPlugin.qcc/RcmdrPlugin.qcc.pdf and http://cran.r-project.org/web/packages/qcc/qcc.pdf
  14. qual
  15. SensoMineR
  16. SLC
  17. sos
  18. survival-http://cran.r-project.org/web/packages/RcmdrPlugin.survival/RcmdrPlugin.survival.pdf
  19. SurvivalT
  20. Teaching Demos

Note the naming convention for above e plugins is always with a Prefix of “RCmdrPlugin.” followed by the names above
Also on loading a Plugin, it must be already installed locally to be visible in R Commander’s list of load-plugin, and R Commander loads the e-plugin after restarting.Hence it is advisable to load all R Commander plugins in the beginning of the analysis session.

However the notable E Plugins are
1) DoE for Design of Experiments-
Full factorial designs, orthogonal main effects designs, regular and non-regular 2-level fractional
factorial designs, central composite and Box-Behnken designs, latin hypercube samples, and simple D-optimal designs can currently be generated from the GUI. Extensions to cover further latin hypercube designs as well as more advanced D-optimal designs (with blocking) are planned for the future.
2) Survival- This package provides an R Commander plug-in for the survival package, with dialogs for Cox models, parametric survival regression models, estimation of survival curves, and testing for differences in survival curves, along with data-management facilities and a variety of tests, diagnostics and graphs.
3) qcc -GUI for  Shewhart quality control charts for continuous, attribute and count data. Cusum and EWMA charts. Operating characteristic curves. Process capability analysis. Pareto chart and cause-and-effect chart. Multivariate control charts
4) epack- an Rcmdr “plug-in” based on the time series functions. Depends also on packages like , tseries, abind,MASS,xts,forecast. It covers Log-Exceptions garch
and following Models -Arima, garch, HoltWinters
5)Export- The package helps users to graphically export Rcmdr output to LaTeX or HTML code,
via xtable() or Hmisc::latex(). The plug-in was originally intended to facilitate exporting Rcmdr
output to formats other than ASCII text and to provide R novices with an easy-to-use,
easy-to-access reference on exporting R objects to formats suited for printed output. The
package documentation contains several pointers on creating reports, either by using
conventional word processors or LaTeX/LyX.
6) MAc- This is an R-Commander plug-in for the MAc package (Meta-Analysis with
Correlations). This package enables the user to conduct a meta-analysis in a menu-driven,
graphical user interface environment (e.g., SPSS), while having the full statistical capabilities of
R and the MAc package. The MAc package itself contains a variety of useful functions for
conducting a research synthesis with correlational data. One of the unique features of the MAc
package is in its integration of user-friendly functions to complete the majority of statistical steps
involved in a meta-analysis with correlations.
You can read more on R Commander Plugins at http://wp.me/p9q8Y-1Is
—————————————————————————————————————————-
Rattle- R Analytical Tool To Learn Easily (download from http://rattle.togaware.com/)
Rattle is more advanced user Interface than R Commander though not as popular in academia. It has been designed explicitly for data mining and it also has a commercial version for sale by Togaware. Rattle has a Tab and radio button/check box rather than Menu- drop down approach towards the graphical design. Also the Execute button needs to be clicked after checking certain options, just the same as submit button is clicked after writing code. This is different from clicking on a drop down menu.

Advantages of Using Rattle
1) Useful for beginner in R language to do building models,cluster and data mining.
2) Has separate tabs for data entry,summary, visualization,model building,clustering, association and evaluation. The design is intuitive and easy to understand even for non statistical background as the help is conveniently explained as each tab, button is clicked. Also the tabs are placed in a very sequential and logical order.
3) Uses a lot of other R packages to build a complete analytical platform. Very good for correlation graph,clustering as well decision trees.
4) Easy to understand interface even for first time user.
5) Log  for R code is auto generated and time stamp is placed.
6) Complete solution for model building from partitioning datasets randomly for testing,validation to building model, evaluating lift and ROC curve, and exporting PMML output of model for scoring.
7) Has a well documented online help as well as in-software documentation. The help helps explain terms even to non statistical users and is highly useful for business users.

Example Documentation for Hypothesis Testing in Test Tab in Rattle is ”
Distribution of the Data
* Kolomogorov-Smirnov     Non-parametric Are the distributions the same?
* Wilcoxon Signed Rank    Non-parametric Do paired samples have the same distribution?
Location of the Average
* T-test               Parametric     Are the means the same?
* Wilcoxon Rank-Sum    Non-parametric Are the medians the same?
Variation in the Data
* F-test Parametric Are the variances the same?
Correlation
* Correlation    Pearsons Are the values from the paired samples correlated?”

Comparative Disadvantages of using Rattle-
1) It is basically aimed at a data miner.  Hence it is more of a data mining GUI rather than an analytics GUI.
2) Has limited ability to create different types of graphs from a business analysts perspective Numeric variables can be made into Box-Plot, Histogram, Cumulative as well Benford Graphs. While interactivity using GGobi and Lattiticist is involved- the number of graphical options is still lesser than other GUI.
3) It is not suited for projects that involve multiple graphical analysis and which do not have model building or data mining.For example Data Plot is given in clustering tab but not in general Explore tab.
4) Despite the fact that it is meant for data miners, no support to biglm packages, as well as parallel programming is enabled in GUI for bigger datasets, though these can be done by R command line in conjunction with the Rattle GUI. Data m7ining is typically done on bigger datsets.
5) May have some problems installing it as it is dependent on GTK and has a lot of packages as dependencies.

Top Row-
This has the Execute Button (shown as two gears) and which has keyboard shortcut F2. It is used to execute the options in Tabs-and is equivalent of submit code button.
Other buttons include new Projects,Save  and Load projects which are files with extension to .rattle an which store all related information from Rattle.
It also has a button for exporting information in the current Tab as an open office document, and buttons for interrupting current process as well as exiting Rattle.

Data Tab-
It has the following options.
●        Data Type- These are radio buttons between Spreadsheet (and Comma Separated Values), ARFF files (Weka), ODBC (for Database Connections),Library (for Datasets from Packages),R Dataset or R datafile, Corpus (for Text Mining) and Script for generating the data by code.
●        The second row-in Data Tab in Rattle is Detail on Data Type- and its apperance shifts as per the radio button selection of data type in previous step. For Spreadsheet, it will show Path of File, Delimiters, Header Row while for ODBC it will show DSN, Tables, Rows and for Library it will show you a dropdown of all datasets in all R packages installed locally.
●        The third row is a Partition field for splitting dataset in training,testing,validation and it shows ratio. It also specifies a Random seed which can be customized for random partitions which can be replicated. This is very useful as model building requires model to be built and tested on random sub sets of full dataset.
●        The fourth row is used to specify the variable type of inputted data. The variable types are
○        Input: Used for modeling as independent variables
○        Target: Output for modeling or the dependent variable. Target is a categoric variable for classification, numeric for regression and for survival analysis both Time and Status need to be defined
○        Risk: A variable used in the Risk Chart
○        Ident: An identifier for unique observations in the data set like AccountId or Customer Id
○        Ignore: Variables that are to be ignored.
●        In addition the weight calculator can be used to perform mathematical operations on certain variables and identify certain variables as more important than others.

Explore Tab-
Summary Sub-Tab has Summary for brief summary of variables, Describe for detailed summary and Kurtosis and Skewness for comparing them across numeric variables.
Distributions Sub-Tab allows plotting of histograms, box plots, and cumulative plots for numeric variables and for categorical variables Bar Plot and Dot Plot.
It also has Benford Plot for Benford’s Law on probability of distribution of digits.
Correlation Sub-Tab– This displays corelation between variables as a table and also as a very nice plot.
Principal Components Sub-Tab– This is for use with Principal Components Analysis including the SVD (singular value decomposition) and Eigen methods.
Interactive Sub-Tab- Allows interactive data exploration using GGobi and Lattice software. It is a powerful visual tool.

Test Tab-This has options for hypothesis testing of data for two sample tests.
Transform Tab-This has options for rescaling data, missing values treatment, and deleting invalid or missing values.
Cluster Tab-It gives an option to KMeans, Hierarchical and Bi-Cluster clustering methods with automated graphs,plots (including dendogram, discriminant plot and data plot) and cluster results available. It is highly recommended for clustering projects especially for people who are proficient in clustering but not in R.

Associate Tab-It helps in building association rules between categorical variables, which are in the form of “if then”statements. Example. If day is Thursday, and someone buys Milk, there is 80% chance they will buy Diapers. These probabilities are generated from observed frequencies.

Model Tab-The Model tab makes Rattle one of the most advanced data mining tools, as it incorporates decision trees(including boosted models and forest method), linear and logistic regression, SVM,neural net,survival models.
Evaluate Tab-It as functionality for evaluating models including lift,ROC,confusion matrix,cost curve,risk chart,precision, specificity, sensitivity as well as scoring datasets with built model or models. Example – A ROC curve generated by Rattle for Survived Passengers in Titanic (as function of age,class,sex) This shows comparison of various models built.

Log Tab- R Code is automatically generated by Rattle as the respective operation is executed. Also timestamp is done so it helps in reviewing error as well as evaluating speed for code optimization.
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JGR- Deducer- (see http://www.deducer.org/pmwiki/pmwiki.php?n=Main.DeducerManual
JGR is a Java Based GUI. Deducer is recommended for use with JGR.
Deducer has basically been made to implement GGPLOT in a GUI- an advanced graphics package based on Grammer of Graphics and was part of Google Summer of Code project.

It first asks you to either open existing dataset or load a new dataset with just two icons. It has two initial views in Data Viewer- a Data view and Variable view which is quite similar to Base SPSS. The other Deducer options are loaded within the JGR console.

Advantages of Using  Deducer
1.      It has an option for factor as well as reliability analysis which is missing in other graphical user interfaces like R Commander and Rattle.
2.      The plot builder option gives very good graphics -perhaps the best in other GUIs. This includes a color by option which allows you to shade the colors based on variable value. An addition innovation is the form of templates which enables even a user not familiar with data visualization to choose among various graphs and click and drag them to plot builder area.
3.      You can set the Java Gui for R (JGR) menu to automatically load some packages by default using an easy checkbox list.
4.      Even though Deducer is a very young package, it offers a way for building other R GUIs using Java Widgets.
5.      Overall feel is of SPSS (Base GUI) to it’s drop down menu, and selecting variables in the sub menu dialogue by clicking to transfer to other side.SPSS users should be more comfortable at using this.
6.      A surprising thing is it rearranges the help documentation of all R in a very presentable and organized manner
7.      Very convenient to move between two or more datasets using dropdown.
8.      The most convenient GUI for merging two datasets using common variable.

Dis Advantages of Using  Deducer
1.      Not able to save plots as images (only options are .pdf and .eps), you can however copy as image.
2.      Basically a data viualization GUI – it does offer support for regression, descriptive statistics in the menu item Extras- however the menu suggests it is a work in progress.
3.      Website for help is outdated, and help documentation specific to Deducer lacks detail.



Components of Deducer-
Data Menu-Gives options for data manipulation including recoding variables,transform variables (binning, mathematical operation), sort dataset,  transpose dataset ,merge two datasets.
Analysis Menu-Gives options for frequency tables, descriptive statistics,cross tabs, one sample tests (with plots) ,two sample tests (with plots),k sample tests, correlation,linear and logistic models,generalized linear models.
Plot Builder Menu- This allows plots of various kinds to be made in an interactive manner.

Correlation using Deducer.

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Red-R – A dataflow user interface for R (see http://red-r.org/

Red R uses dataflow concepts as a user interface rather than menus and tabs. Thus it is more similar to Enterprise Miner or Rapid Miner in design. For repeatable analysis dataflow programming is preferred by some analysts. Red-R is written in Python.


Advantages of using Red-R
1) Dataflow style makes it very convenient to use. It is the only dataflow GUI for R.
2) You can save the data as well as analysis in the same file.
3) User Interface makes it easy to read R code generated, and commit code.
4) For repeatable analysis-like reports or creating models it is very useful as you can replace just one widget and other widget/operations remain the same.
5) Very easy to zoom into data points by double clicking on graphs. Also to change colors and other options in graphs.
6) One minor feature- It asks you to set CRAN location just once and stores it even for next session.
7) Automated bug report submission.

Disadvantages of using Red-R
1) Current version is 1.8 and it needs a lot of improvement for building more modeling types as well as debugging errors.
2) Limited features presently.
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RKWard (see http://rkward.sourceforge.net/)

It is primarily a KDE GUI for R, so it can be used on Ubuntu Linux. The windows version is available but has some bugs.

Advantages of using RKWard
1) It is the only R GUI for time series at present.
In addition it seems like the only R GUI explicitly for Item Response Theory (which includes credit response models,logistic models) and plots contains Pareto Charts.
2) It offers a lot of detail in analysis especially in plots(13 types of plots), analysis and  distribution analysis ( 8 Tests of normality,14 continuous and 6 discrete distributions). This detail makes it more suitable for advanced statisticians rather than business analytics users.
3) Output can be easily copied to Office documents.

Disadvantages of using RKWard
1) It does not have stable Windows GUI. Since a graphical user interface is aimed at making interaction easier for users- this is major disadvantage.
2) It has a lot of dependencies so may have some issues in installing.
3) The design categorization of analysis,plots and distributions seems a bit unbalanced considering other tabs are File, Edit, View, Workspace,Run,Settings, Windows,Help.
Some of the other tabs can be collapsed, while the three main tabs of analysis,plots,distributions can be better categorized (especially into modeling and non-modeling analysis).
4) Not many options for data manipulation (like subset or transpose) by the GUI.
5) Lack of detail in documentation as it is still on version 0.5.3 only.

Components-
Analysis, Plots and Distributions are the main components and they are very very extensive, covering perhaps the biggest range of plots,analysis or distribution analysis that can be done.
Thus RKWard is best combined with some other GUI, when doing advanced statistical analysis.

 

GNU General Public License
Image via Wikipedia

GrapherR

GrapheR is a Graphical User Interface created for simple graphs.

Depends: R (>= 2.10.0), tcltk, mgcv
Description: GrapheR is a multiplatform user interface for drawing highly customizable graphs in R. It aims to be a valuable help to quickly draw publishable graphs without any knowledge of R commands. Six kinds of graphs are available: histogram, box-and-whisker plot, bar plot, pie chart, curve and scatter plot.
License: GPL-2
LazyLoad: yes
Packaged: 2011-01-24 17:47:17 UTC; Maxime
Repository: CRAN
Date/Publication: 2011-01-24 18:41:47

More information about GrapheR at CRAN
Path: /cran/newpermanent link

Advantages of using GrapheR

  • It is bi-lingual (English and French) and can import in text and csv files
  • The intention is for even non users of R, to make the simple types of Graphs.
  • The user interface is quite cleanly designed. It is thus aimed as a data visualization GUI, but for a more basic level than Deducer.
  • Easy to rename axis ,graph titles as well use sliders for changing line thickness and color

Disadvantages of using GrapheR

  • Lack of documentation or help. Especially tips on mouseover of some options should be done.
  • Some of the terms like absicca or ordinate axis may not be easily understood by a business user.
  • Default values of color are quite plain (black font on white background).
  • Can flood terminal with lots of repetitive warnings (although use of warnings() function limits it to top 50)
  • Some of axis names can be auto suggested based on which variable s being chosen for that axis.
  • Package name GrapheR refers to a graphical calculator in Mac OS – this can hinder search engine results

Using GrapheR

  • Data Input -Data Input can be customized for CSV and Text files.
  • GrapheR gives information on loaded variables (numeric versus Factors)
  • It asks you to choose the type of Graph 
  • It then asks for usual Graph Inputs (see below). Note colors can be customized (partial window). Also number of graphs per Window can be easily customized 
  • Graph is ready for publication



Related Articles

 

Summary of R GUIs


Using R from other software- Please note that interfaces to R exist from other software as well. These include software from SAS Institute, IBM SPSS, Rapid Miner,Knime  and Oracle.

A brief list is shown below-

1) SAS/IML Interface to R- You can read about the SAS Institute’s SAS/ IML Studio interface to R at http://www.sas.com/technologies/analytics/statistics/iml/index.html
2) Rapid  Miner Extension to R-You can view integration with Rapid Miner’s extension to R here at http://www.youtube.com/watch?v=utKJzXc1Cow
3) IBM SPSS plugin for R-SPSS software has R integration in the form of a plugin. This was one of the earliest third party software offering interaction with R and you can read more at http://www.spss.com/software/statistics/developer/
4) Knime- Konstanz Information Miner also has R integration. You can view this on
http://www.knime.org/downloads/extensions
5) Oracle Data Miner- Oracle has a data mining offering to it’s very popular database software which is integrated with the R language. The R Interface to Oracle Data Mining ( R-ODM) allows R users to access the power of Oracle Data Mining’s in-database functions using the familiar R syntax. http://www.oracle.com/technetwork/database/options/odm/odm-r-integration-089013.html
6) JMP- JMP version 9 is the latest to offer interface to R.  You can read example scripts here at http://blogs.sas.com/jmp/index.php?/archives/298-JMP-Into-R!.html

R Excel- Using R from Microsoft Excel

Microsoft Excel is the most widely used spreadsheet program for data manipulation, entry and graphics. Yet as dataset sizes have increased, Excel’s statistical capabilities have lagged though it’s design has moved ahead in various product versions.

R Excel basically works at adding a .xla plugin to
Excel just like other Plugins. It does so by connecting to R through R packages.

Basically it offers the functionality of R
functions and capabilities to the most widely distributed spreadsheet program. All data summaries, reports and analysis end up in a spreadsheet-

R Excel enables R to be very useful for people not
knowing R. In addition it adds (by option) the menus of R Commander as menus in Excel spreadsheet.


Advantages-
Enables R and Excel to communicate thus tieing an advanced statistical tool to the most widely used business analytics tool.

Disadvantages-
No major disadvatage at all to a business user. For a data statistical user, Microsoft Excel is limited to 100,000 rows, so R data needs to be summarized or reduced.

Graphical capabilities of R are very useful, but to a new user, interactive graphics in Excel may be easier than say using Ggplot ot Ggobi.
You can read more on this at http://rcom.univie.ac.at/ or  the complete Springer Book http://www.springer.com/statistics/computanional+statistics/book/978-1-4419-0051-7

The combination of cloud computing and internet offers a new kind of interaction possible for scientists as well analysts.

Here is a way to use R on an Amazon EC2 machine, thus renting by hour hardware and computing resources which are scaleable to massive levels , whereas the software is free.

Here is how you can connect to Amazon EC2 and run R.
Running R for Cloud Computing.
1) Logging onto Amazon Console http://aws.amazon.com/ec2/
Note you need your Amazon Id (even the same id which you use for buying books).Note we are into Amazon EC2 as shown by the upper tab. Click upper tab to get into the Amazon EC2
2) Choosing the right AMI-On the left margin, you can click AMI -Images. Now you can search for the image-I chose Ubuntu images (linux images are cheaper) and latest Ubuntu Lucid  in the search .You can choose whether you want 32 bit or 64 bit image. 64 bit images will lead to  faster processing of data.Click on launch instance in the upper tab ( near the search feature). A pop up comes up, which shows the 5 step process to launch your computing.
3) Choose the right compute instance- – there are various compute instances and they all are at different multiples of prices or compute units. They differ in terms of RAM memory and number of processors.After choosing the compute instance of your choice (extra large is highlighted)- click on continue-
4) Instance Details-Do not  choose cloudburst monitoring if you are on a budget as it has a extra charge. For critical production it would be advisable to choose cloudburst monitoring once you have become comfortable with handling cloud computing..
5) Add Tag Details- If you are running a lot of instances you need to create your own tags to help you manage them. It is advisable if you are going to run many instances.
6) Create a key pair- A key pair is an added layer of encryption. Click on create new pair and name it (note the name will be handy in coming steps)
7) After clicking and downloading the key pair- you come into security groups. Security groups is just a set of instructions to help keep your data transfer secure. You want to enable access to your cloud instance to certain IP addresses (if you are going to connect from fixed IP address and to certain ports in your computer. It is necessary in security group to enable  SSH using Port 22.
Last step- Review Details and Click Launch
8) On the Left margin click on instances ( you were in Images.>AMI earlier)
It will take some 3-5 minutes to launch an instance. You can see status as pending till then.
9) Pending instance as shown by yellow light-
10) Once the instance is running -it is shown by a green light.
Click on the check box, and on upper tab go to instance actions. Click on connect-
You see a popup with instructions like these-
· Open the SSH client of your choice (e.g., PuTTY, terminal).
·  Locate your private key, nameofkeypair.pem
·  Use chmod to make sure your key file isn’t publicly viewable, ssh won’t work otherwise:
chmod 400 decisionstats.pem
·  Connect to your instance using instance’s public DNS [ec2-75-101-182-203.compute-1.amazonaws.com].
Example
Enter the following command line:
ssh -i decisionstats2.pem root@ec2-75-101-182-203.compute-1.amazonaws.com

Note- If you are using Ubuntu Linux on your desktop/laptop you will need to change the above line to ubuntu@… from root@..

ssh -i yourkeypairname.pem -X ubuntu@ec2-75-101-182-203.compute-1.amazonaws.com

(Note X11 package should be installed for Linux users- Windows Users will use Remote Desktop)

12) Install R Commander on the remote machine (which is running Ubuntu Linux) using the command

sudo apt-get install r-cran-rcmdr


Red R 1.8- Pretty GUI

Red R 1.8 has been compiled and is available for download.

If you have seen Red R, well it resembles software like Enterprise Miner or Rapid Miner in the visual sense as it basically has a work-flow style of showing and setting up data analysis.

I played a bit with it, and this version is a definite improvement over the last ones.- Here is one more really groovy GUI for R- and it’s quite professionally done.

And a Youtube tutorial as well

Take a bow- Kyle and Anup- nice coding indeed.