Data Quality in R #rstats

Many Data Quality Formats give problems when importing in your statistical software.A statistical software is quite unable to distingush between $1,000, 1000% and 1,000 and 1000 and will treat the former three as character variables while the third as a numeric variable by default. This issue is further compounded by the numerous ways we can represent date-time variables.

The good thing is for specific domains like finance and web analytics, even these weird data input formats are fixed, so we can fix up a list of handy data quality conversion functions in R for reference.

 

After much muddling about with coverting internet formats (or data used in web analytics) (mostly time formats without date like 00:35:23)  into data frame numeric formats, I found that the way to handle Date-Time conversions in R is

Dataset$Var2= strptime(as.character(Dataset$Var1),”%M:%S”)

The problem with this approach is you will get the value as a Date Time format (02/31/2012 04:00:45-  By default R will add today’s date to it.)  while you are interested in only Time Durations (4:00:45 or actually just the equivalent in seconds).

this can be handled using the as.difftime function

dataset$Var2=as.difftime(paste(dataset$Var1))

or to get purely numeric values so we can do numeric analysis (like summary)

dataset$Var2=as.numeric(as.difftime(paste(dataset$Var1)))

(#Maybe there is  a more elegant way here- but I dont know)

The kind of data is usually one we get in web analytics for average time on site , etc.

 

 

 

 

 

and

for factor variables

Dataset$Var2= as.numeric(as.character(Dataset$Var1))

 

or

Dataset$Var2= as.numeric(paste(Dataset$Var1))

 

Slight problem is suppose there is data like 1,504 – it will be converted to NA instead of 1504

The way to solve this is use the nice gsub function ONLy on that variable. Since the comma is also the most commonly used delimiter , you dont want to replace all the commas, just only the one in that variable.

 

dataset$Variable2=as.numeric(paste(gsub(“,”,””,dataset$Variable)))

 

Now lets assume we have data in the form of % like 0.00% , 1.23%, 3.5%

again we use the gsub function to replace the % value in the string with  (nothing).

 

dataset$Variable2=as.numeric(paste(gsub(“%”,””,dataset$Variable)))

 

 

If you simply do the following for a factor variable, it will show you the level not the value. This can create an error when you are reading in CSV data which may be read as character or factor data type.

Dataset$Var2= as.numeric(Dataset$Var1)

An additional way is to use substr (using substr( and concatenate (using paste) for manipulating string /character variables.

 

iris$sp=substr(iris$Species,1,3) –will reduce the famous Iris species into three digits , without losing any analytical value.

The other issue is with missing values, and na.rm=T helps with getting summaries of numeric variables with missing values, we need to further investigate how suitable, na.omit functions are for domains which have large amounts of missing data and need to be treated.

 

 

Webscraping using iMacros

The noted Diamonds dataset in the ggplot2 package of R is actually culled from the website http://www.diamondse.info/diamond-prices.asp

However it has ~55000 diamonds, while the whole Diamonds search engine has almost ten times that number. Using iMacros – a Google Chrome Plugin, we can scrape that data (or almost any data). The iMacros chrome plugin is available at  https://chrome.google.com/webstore/detail/cplklnmnlbnpmjogncfgfijoopmnlemp while notes on coding are at http://wiki.imacros.net

Imacros makes coding as easy as recording macro and the code is automatcially generated for whatever actions you do. You can set parameters to extract only specific parts of the website, and code can be run into a loop (of 9999 times!)

Here is the iMacros code-Note you need to navigate to the web site http://www.diamondse.info/diamond-prices.asp before running it

VERSION BUILD=5100505 RECORDER=CR
FRAME F=1
SET !EXTRACT_TEST_POPUP NO
SET !ERRORIGNORE YES
TAG POS=6 TYPE=TABLE ATTR=TXT:* EXTRACT=TXT
TAG POS=1 TYPE=DIV ATTR=CLASS:paginate_enabled_next
SAVEAS TYPE=EXTRACT FOLDER=* FILE=test+3

 

 

 

 

 

 

 

 

 

and voila- all the diamonds you need to analyze!

The returning data can be read using the standard delimiter data munging in the language of SAS or R.

More on IMacros from

https://chrome.google.com/webstore/detail/cplklnmnlbnpmjogncfgfijoopmnlemp/details

Description

Automate your web browser. Record and replay repetitious work

If you encounter any problems with iMacros for Chrome, please let us know in our Chrome user forum at http://forum.iopus.com/viewforum.php?f=21

Our forum is also the best place for new feature suggestions :-)
----

iMacros was designed to automate the most repetitious tasks on the web. If there’s an activity you have to do repeatedly, just record it in iMacros. The next time you need to do it, the entire macro will run at the click of a button! With iMacros, you can quickly and easily fill out web forms, remember passwords, create a webmail notifier, and more. You can keep the macros on your computer for your own use, use them within bookmark sync / Xmarks or share them with others by embedding them on your homepage, blog, company Intranet or any social bookmarking service as bookmarklet. The uses are limited only by your imagination!

Popular uses are as web macro recorder, form filler on steroids and highly-secure password manager (256-bit AES encryption).


Interview BigML.com

Here is an interview with Charlie Parker, head of large scale online algorithms at http://bigml.com

Ajay-  Describe your own personal background in scientific computing, and how you came to be involved with machine learning, cloud computing and BigML.com

Charlie- I am a machine learning Ph.D. from Oregon State University. Francisco Martin (our founder and CEO), Adam Ashenfelter (the lead developer on the tree algorithm), and myself were all studying machine learning at OSU around the same time. We all went our separate ways after that.

Francisco started Strands and turned it into a 100+ million dollar company building recommender systems. Adam worked for CleverSet, a probabilistic modeling company that was eventually sold to Cisco, I believe. I worked for several years in the research labs at Eastman Kodak on data mining, text analysis, and computer vision.

When Francisco left Strands to start BigML, he brought in Justin Donaldson who is a brilliant visualization guy from Indiana, and an ex-Googler named Jose Ortega who is responsible for most of our data infrastructure. They pulled in Adam and I a few months later. We also have Poul Petersen, a former Strands employee, who manages our herd of servers. He is a wizard and makes everyone else’s life much easier.

Ajay- You use clojure for the back end of BigML.com .Are there any other languages and packages you are considering? What makes clojure such a good fit for cloud computing ?

Charlie- Clojure is a great language because it offers you all of the benefits of Java (extensive libraries, cross-platform compatibility, easy integration with things like Hadoop, etc.) but has the syntactical elegance of a functional language. This makes our code base small and easy to read as well as powerful.

We’ve had occasional issues with speed, but that just means writing the occasional function or library in Java. As we build towards processing data at the Terabyte level, we’re hoping to create a framework that is language-agnostic to some extent. So if we have some great machine learning code in C, for example, we’ll use Clojure to tie everything together, but the code that does the heavy lifting will still be in C. For the API and Web layers, we use Python and Django, and Justin is a huge fan of HaXe for our visualizations.

 Ajay- Current support is for Decision Trees. When can we see SVM, K Means Clustering and Logit Regression?

Charlie- Right now we’re focused on perfecting our infrastructure and giving you new ways to put data in the system, but expect to see more algorithms appearing in the next few months. We want to make sure they are as beautiful and easy to use as the trees are. Without giving too much away, the first new thing we will probably introduce is an ensemble method of some sort (such as Boosting or Bagging). Clustering is a little further away but we’ll get there soon!

Ajay- How can we use the BigML.com API using R and Python.

Charlie- We have a public github repo for the language bindings. https://github.com/bigmlcom/io Right now, there there are only bash scripts but that should change very soon. The python bindings should be there in a matter of days, and the R bindings in probably a week or two. Clojure and Java bindings should follow shortly after that. We’ll have a blog post about it each time we release a new language binding. http://blog.bigml.com/

Ajay-  How can we predict large numbers of observations using a Model  that has been built and pruned (model scoring)?

Charlie- We are in the process of refactoring our backend right now for better support for batch prediction and model evaluation. This is something that is probably only a few weeks away. Keep your eye on our blog for updates!

Ajay-  How can we export models built in BigML.com for scoring data locally.

Charlie- This is as simple as a call to our API. https://bigml.com/developers/models The call gives you a JSON object representing the tree that is roughly equivalent to a PMML-style representation.

About-

You can read about Charlie Parker at http://www.linkedin.com/pub/charles-parker/11/85b/4b5 and the rest of the BigML team at

https://bigml.com/team

 

Protected: Converting SAS language code to Java

This content is password-protected. To view it, please enter the password below.

Software Review- Google Drive versus Dropbox

Here are some notes from reviewing Google Drive  https://drive.google.com/ vs Dropbox https://www.dropbox.com/.

1) Google Drive gives more free space upfront  than Dropbox.5GB versus 2GB

2) Dropbox has a referral system 500 mb per referral while there is no referral system for Google Drive

3) The sync facility with Google Docs makes Google Drive especially useful for prior users of Google Docs.

4) API access to Google Drive is only for Chrome apps which is intriguing!

https://developers.google.com/drive/apps_overview

Apps will not have any API access to files unless users have first installed the app in Chrome Web Store.

You can use the Dropbox API much more easily –

See the platforms at

https://www.dropbox.com/developers/start/core

Choose your platform:

iOS Android Python Ruby

But-

(though I wonder if you set the R working directory to the local shared drive for Google Drive it should sync up as well but of course be slower –http://scrogster.wordpress.com/2011/01/29/using-dropbox-with-r-2/)

5) Google Drive icon is ugly (seriously, dude!) , but the features in the Windows app is just the same as the Dropbox App. Too similar 😉

 

6) Upgrade space is much more cheaper to Google Drive than Dropbox ( by Google Drive prices being exactly  a quarter of prices on Dropbox and max storage being 16 times as much). This will affect power storage users. I expect to see some slowdown in Dropbox new business unless G Drive has outage (like Gmail) . Existing users at Dropbox probably wont shift for the small dollar amount- though it is quite easy to do so.

 

Install Google Drive on your local workstation and cut and paste your Dropbox local folder to the Google Drive local folder!!

7) Dropbox deserves credit for being first (like Hotmail and AOL) but Google Drive is almost better in all respects!

Google Drive

Free
5 GB of Drive (0% used)
10 GB of Gmail (48% used)
1 GB of Picasa (0% used)

Upgrade:

25 GB
2,49 $ / Month
+25 GB for Drive and Picasa
Bonus: Your Gmail storage will be upgraded to 25 GB.
Choose this plan

100 GB
4,99 $ / Month
+100 GB for Drive and Picasa
Bonus: Your Gmail storage will be upgraded to 25 GB.
Choose this plan

 Need more storage?

Up to 16 TB available

Dropbox–

Current account type

Large DropboxDropbox Badge greenFree
Free
Up to 18 GB (2 GB + 500 MB per referral)
Account info 

Other account types

Large DropboxDropbox Badge orange50 GB +
Pro 50
+1 GB per referral, up to +32 GB
$9.99/month or $99.00/year Upgrade to Pro 50
Large DropboxDropbox Badge purple100 GB +
Pro 100
+1 GB per referral, up to +32 GB
$19.99/month or $199.00/year Upgrade to Pro 100
Triple DropboxDropbox For Teams Badge1 TB +
Teams
Plans starting at 1 TB
Large shared quota, centralized admin and billing, and more!

 

 

 

Facebook Search- The fall of the machines

Increasingly I am beginning to search more and more on Facebook. This is for the following reasons-

1) Facebook is walled off to Google (mostly). While within Facebook , I get both people results and content results (from Bing).

Bing is an okay alternative , though not as fast as Google Instant.

2) Cleaner Web Results When Facebook increases the number of results from 3 top links to say 10 top links, there should be more outbound traffic from FB search to websites.For some reason Google continues to show 14 pages of results… Why? Why not limit to just one page.

3) Better People Search than  Pipl and Google. But not much (or any) image search. This is curious and I am hoping the Instagram results would be added to search results.

4) I am hoping for any company Facebook or Microsoft to challenge Adsense . Adwords already has rivals. Adsense is a de facto monopoly and my experiences in advertising show that content creators can make much more money from a better Adsense (especially ) if Adsense and Adwords do not have a conflict of interest from same advertisers.

Adwords should have been a special case of Adsense for Google.com but it is not.

5) Machine learning can only get you from tau to delta tau. When ad click behavior is inherently dependent on humans who behave mostly on chaotic , or genetic models than linear CPC models. I find FB has an inherent advantage in the quantity and quality of data collected on people behavior rather than click behavior. They are also more aggressive and less apologetic about behavorially targeted  ads.

Additional point- Analytics for Google Analytics is not as rich as analytics from Facebook pages in terms of demographic variables. This can be tested by anyone.

 

Cricinfo StatsGuru Database for Statistical and Graphical Analysis

Data from the ESPN Cricinfo website is available from the STATSGURU website.

The url is of the form-

http://stats.espncricinfo.com/ci/engine/stats/index.html?class=1;team=6;template=results;type=batting

http://stats.espncricinfo.com/ci/engine/stats/index.html?

class=1;team=6;template=results;type=batting

If you break down this URL to get more statistics on cricket, you can choose the following parameters.
class
1=Test
2=ODI
3=T20I
11=Test+ODI+T20I
team
1=England
2=Australia
3=South America
4-West Indies
5=New Zealand
6=India ,7=Pakistan and 8=Sri Lanka

type
batting
bowling
fielding
allround
fow
official
team
aggregate

 

ESPN Terms of Use are here-you may need to  check this before trying any web scraping.

http://www.espncricinfo.com/ci/content/site/company/terms_use.html

 

However ESPN has unleashed the API (including both free and premium)for Developers at http://developer.espn.com/docs.

and especially these sports http://developer.espn.com/docs/headlines#parameters

/sports News across all sports/sections
/sports/baseball/mlb Major League Baseball (MLB)
/sports/basketball/mens-college-basketball NCAA Men’s College Basketball
/sports/basketball/nba National Basketball Association (NBA)
/sports/basketball/wnba Women’s National Basketball Association (WNBA)
/sports/basketball/womens-college-basketball NCAA Women’s College Basketball
/sports/boxing Boxing
/sports/football/college-football NCAA College Football
/sports/football/nfl National Football League (NFL)
/sports/golf Golf
/sports/hockey/nhl National Hockey League (NHL)
/sports/horse-racing Horse Racing
/sports/mma Mixed Martial Arts
/sports/racing Auto Racing
/sports/racing/nascar NASCAR Racing
/sports/soccer Professional soccer (US focus)
/sports/tennis Tennis

 

I wonder when this can be enabled for Cricket as well (including APIs  free,academic,premium,partner ).

(Note you can use R packages XML , RCurl , rjson, to get data from the web among others).

Plotting is best done using ggplot2 http://had.co.nz/ggplot2/ or d3.js at http://mbostock.github.com/d3/, and the current status of cricket graphics can surely look a change- they are mostly a single radial plot of shots played /runs scored or a combined barplot/line graph.