R Commander Plugins-20 and growing!

First graphical user interface in 1973.
Image via Wikipedia
R Commander Extensions: Enhancing a Statistical Graphical User Interface by extending menus to statistical packages

R Commander ( see paper by Prof J Fox at http://www.jstatsoft.org/v14/i09/paper ) is a well known and established graphical user interface to the R analytical environment.
While the original GUI was created for a basic statistics course, the enabling of extensions (or plug-ins  http://www.r-project.org/doc/Rnews/Rnews_2007-3.pdf ) has greatly enhanced the possible use and scope of this software. Here we give a list of all known R Commander Plugins and their uses along with brief comments.

  1. DoE – http://cran.r-project.org/web/packages/RcmdrPlugin.DoE/RcmdrPlugin.DoE.pdf
  2. doex
  3. EHESampling
  4. epack- http://cran.r-project.org/web/packages/RcmdrPlugin.epack/RcmdrPlugin.epack.pdf
  5. Export- http://cran.r-project.org/web/packages/RcmdrPlugin.Export/RcmdrPlugin.Export.pdf
  6. FactoMineR
  7. HH
  8. IPSUR
  9. MAc- http://cran.r-project.org/web/packages/RcmdrPlugin.MAc/RcmdrPlugin.MAc.pdf
  10. MAd
  11. orloca
  12. PT
  13. qcc- http://cran.r-project.org/web/packages/RcmdrPlugin.qcc/RcmdrPlugin.qcc.pdf and http://cran.r-project.org/web/packages/qcc/qcc.pdf
  14. qual
  15. SensoMineR
  16. SLC
  17. sos
  18. survival-http://cran.r-project.org/web/packages/RcmdrPlugin.survival/RcmdrPlugin.survival.pdf
  19. SurvivalT
  20. Teaching Demos

Note the naming convention for above e plugins is always with a Prefix of “RCmdrPlugin.” followed by the names above
Also on loading a Plugin, it must be already installed locally to be visible in R Commander’s list of load-plugin, and R Commander loads the e-plugin after restarting.Hence it is advisable to load all R Commander plugins in the beginning of the analysis session.

However the notable E Plugins are
1) DoE for Design of Experiments-
Full factorial designs, orthogonal main effects designs, regular and non-regular 2-level fractional
factorial designs, central composite and Box-Behnken designs, latin hypercube samples, and simple D-optimal designs can currently be generated from the GUI. Extensions to cover further latin hypercube designs as well as more advanced D-optimal designs (with blocking) are planned for the future.
2) Survival- This package provides an R Commander plug-in for the survival package, with dialogs for Cox models, parametric survival regression models, estimation of survival curves, and testing for differences in survival curves, along with data-management facilities and a variety of tests, diagnostics and graphs.
3) qcc -GUI for  Shewhart quality control charts for continuous, attribute and count data. Cusum and EWMA charts. Operating characteristic curves. Process capability analysis. Pareto chart and cause-and-effect chart. Multivariate control charts
4) epack- an Rcmdr “plug-in” based on the time series functions. Depends also on packages like , tseries, abind,MASS,xts,forecast. It covers Log-Exceptions garch
and following Models -Arima, garch, HoltWinters
5)Export- The package helps users to graphically export Rcmdr output to LaTeX or HTML code,
via xtable() or Hmisc::latex(). The plug-in was originally intended to facilitate exporting Rcmdr
output to formats other than ASCII text and to provide R novices with an easy-to-use,
easy-to-access reference on exporting R objects to formats suited for printed output. The
package documentation contains several pointers on creating reports, either by using
conventional word processors or LaTeX/LyX.
6) MAc- This is an R-Commander plug-in for the MAc package (Meta-Analysis with
Correlations). This package enables the user to conduct a meta-analysis in a menu-driven,
graphical user interface environment (e.g., SPSS), while having the full statistical capabilities of
R and the MAc package. The MAc package itself contains a variety of useful functions for
conducting a research synthesis with correlational data. One of the unique features of the MAc
package is in its integration of user-friendly functions to complete the majority of statistical steps
involved in a meta-analysis with correlations. It uses recommended procedures as described in
The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).

A query to help for ??Rcmdrplugins reveals the following information which can be quite overwhelming given that almost 20 plugins are now available-

RcmdrPlugin.DoE::DoEGlossary
Glossary for DoE terminology as used in
RcmdrPlugin.DoE
RcmdrPlugin.DoE::Menu.linearModelDesign
RcmdrPlugin.DoE Linear Model Dialog for
experimental data
RcmdrPlugin.DoE::Menu.rsm
RcmdrPlugin.DoE response surface model Dialog
for experimental data
RcmdrPlugin.DoE::RcmdrPlugin.DoE-package
R-Commander plugin package that implements
design of experiments facilities from packages
DoE.base, FrF2 and DoE.wrapper into the
R-Commander
RcmdrPlugin.DoE::RcmdrPlugin.DoEUndocumentedFunctions
Functions used in menus
RcmdrPlugin.doex::ranblockAnova
Internal RcmdrPlugin.doex objects
RcmdrPlugin.doex::RcmdrPlugin.doex-package
Install the DOEX Rcmdr Plug-In
RcmdrPlugin.EHESsampling::OpenSampling1
Internal functions for menu system of
RcmdrPlugin.EHESsampling
RcmdrPlugin.EHESsampling::RcmdrPlugin.EHESsampling-package
Help with EHES sampling
RcmdrPlugin.Export::RcmdrPlugin.Export-package
Graphically export objects to LaTeX or HTML
RcmdrPlugin.FactoMineR::defmacro
Internal RcmdrPlugin.FactoMineR objects
RcmdrPlugin.FactoMineR::RcmdrPlugin.FactoMineR
Graphical User Interface for FactoMineR
RcmdrPlugin.IPSUR::IPSUR-package
An IPSUR Plugin for the R Commander
RcmdrPlugin.MAc::RcmdrPlugin.MAc-package
Meta-Analysis with Correlations (MAc) Rcmdr
Plug-in
RcmdrPlugin.MAd::RcmdrPlugin.MAd-package
Meta-Analysis with Mean Differences (MAd) Rcmdr
Plug-in
RcmdrPlugin.orloca::activeDataSetLocaP
RcmdrPlugin.orloca: A GUI for orloca-package
(internal functions)
RcmdrPlugin.orloca::RcmdrPlugin.orloca-package
RcmdrPlugin.orloca: A GUI for orloca-package
RcmdrPlugin.orloca::RcmdrPlugin.orloca.es
RcmdrPlugin.orloca.es: Una interfaz grafica
para el paquete orloca
RcmdrPlugin.qcc::RcmdrPlugin.qcc-package
Install the Demos Rcmdr Plug-In
RcmdrPlugin.qual::xbara
Internal RcmdrPlugin.qual objects
RcmdrPlugin.qual::RcmdrPlugin.qual-package
Install the quality Rcmdr Plug-In
RcmdrPlugin.SensoMineR::defmacro
Internal RcmdrPlugin.SensoMineR objects
RcmdrPlugin.SensoMineR::RcmdrPlugin.SensoMineR
Graphical User Interface for SensoMineR
RcmdrPlugin.SLC::Rcmdr.help.RcmdrPlugin.SLC
RcmdrPlugin.SLC: A GUI for slc-package
(internal functions)
RcmdrPlugin.SLC::RcmdrPlugin.SLC-package
RcmdrPlugin.SLC: A GUI for SLC R package
RcmdrPlugin.sos::RcmdrPlugin.sos-package
Efficiently search R Help pages
RcmdrPlugin.steepness::Rcmdr.help.RcmdrPlugin.steepness
RcmdrPlugin.steepness: A GUI for
steepness-package (internal functions)
RcmdrPlugin.steepness::RcmdrPlugin.steepness
RcmdrPlugin.steepness: A GUI for steepness R
package
RcmdrPlugin.survival::allVarsClusters
Internal RcmdrPlugin.survival Objects
RcmdrPlugin.survival::RcmdrPlugin.survival-package
Rcmdr Plug-In Package for the survival Package
RcmdrPlugin.TeachingDemos::RcmdrPlugin.TeachingDemos-package
Install the Demos Rcmdr Plug-In

 

The Year 2010

Nokia N800 internet tablet, with open source s...
Image via Wikipedia

My annual traffic to this blog was almost 99,000 . Add in additional views on networking sites plus the 400 plus RSS readers- so I can say traffic was 1,20,000 for 2010. Nice. Thanks for reading and hope it was worth your time. (this is a long post and will take almost 440 secs to read but the summary is just given)

My intent is either to inform you, give something useful or atleast something interesting.

see below-

Jan Feb Mar Apr May Jun
2010 6,311 4,701 4,922 5,463 6,493 4,271
Jul Aug Sep Oct Nov Dec Total
5,041 5,403 17,913 16,430 11,723 10,096 98,767

 

 

Sandro Saita from http://www.dataminingblog.com/ just named me for an award on his blog (but my surname is ohRi , Sandro left me without an R- What would I be without R :)) ).

Aw! I am touched. Google for “Data Mining Blog” and Sandro is the best that it is in data mining writing.

DMR People Award 2010
There are a lot of active people in the field of data mining. You can discuss with them on forums. You can read their blogs. You can also meet them in events such as PAW or KDD. Among the people I follow on a regular basis, I have elected:

Ajay Ori

He has been very active in 2010, especially on his blog . Good work Ajay and continue sharing your experience with us!”

What did I write in 2010- stuff.

What did you read on this blog- well thats the top posts list.

2009-12-31 to Today

Title Views
Home page More stats 21,150
Top 10 Graphical User Interfaces in Statistical Software More stats 6,237
Wealth = function (numeracy, memory recall) More stats 2,014
Matlab-Mathematica-R and GPU Computing More stats 1,946
The Top Statistical Softwares (GUI) More stats 1,405
About DecisionStats More stats 1,352
Using Facebook Analytics (Updated) More stats 1,313
Test drive a Chrome notebook. More stats 1,170
Top ten RRReasons R is bad for you ? More stats 1,157
Libre Office More stats 1,151
Interview Hadley Wickham R Project Data Visualization Guru More stats 1,007
Using Red R- R with a Visual Interface More stats 854
SAS Institute files first lawsuit against WPS- Episode 1 More stats 790
Interview Professor John Fox Creator R Commander More stats 764
R Package Creating More stats 754
Windows Azure vs Amazon EC2 (and Google Storage) More stats 726
Norman Nie: R GUI and More More stats 716
Startups for Geeks More stats 682
Google Maps – Jet Ski across Pacific Ocean More stats 670
Not so AWkward after all: R GUI RKWard More stats 579
Red R 1.8- Pretty GUI More stats 570
Parallel Programming using R in Windows More stats 569
R is an epic fail or is it just overhyped More stats 559
Enterprise Linux rises rapidly:New Report More stats 537
Rapid Miner- R Extension More stats 518
Creating a Blog Aggregator for free More stats 504
So which software is the best analytical software? Sigh- It depends More stats 473
Revolution R for Linux More stats 465
John Sall sets JMP 9 free to tango with R More stats 460

So how do people come here –

well I guess I owe Tal G for almost 9000 views ( incidentally I withdrew posting my blog from R- Bloggers and Analyticbridge blogs – due to SEO keyword reasons and some spam I was getting see (below))

http://r-bloggers.com is still the CAT’s whiskers and I read it  a lot.

I still dont know who linked my blog to a free sex movie site with 400 views but I have a few suspects.

2009-12-31 to Today

Referrer Views
r-bloggers.com 9,131
Reddit 3,829
rattle.togaware.com 1,500
Twitter 1,254
Google Reader 1,215
linkedin.com 717
freesexmovie.irwanaf.com 422
analyticbridge.com 341
Google 327
coolavenues.com 322
Facebook 317
kdnuggets.com 298
dataminingblog.com 278
en.wordpress.com 185
google.co.in 151
xianblog.wordpress.com 130
inside-r.org 124
decisionstats.com 119
ifreestores.com 117
bits.blogs.nytimes.com 108

Still reading this post- gosh let me sell you some advertising. It is only $100 a month (yes its a recession)

Advertisers are treated on First in -Last out (FILO)

I have been told I am obsessed with SEO , but I dont care much for search engines apart from Google, and yes SEO is an interesting science (they should really re name it GEO or Google Engine Optimization)

Apparently Hadley Wickham and Donald Farmer are big keywords for me so I should be more respectful I guess.

Search Terms for 365 days ending 2010-12-31 (Summarized)

2009-12-31 to Today

Search Views
libre office 925
facebook analytics 798
test drive a chrome notebook 467
test drive a chrome notebook. 215
r gui 203
data mining 163
wps sas lawsuit 158
wordle.net 133
wps sas 123
google maps jet ski 123
test drive chrome notebook 96
sas wps 89
sas wps lawsuit 85
chrome notebook test drive 83
decision stats 83
best statistics software 74
hadley wickham 72
google maps jetski 72
libreoffice 70
doug savage 65
hive tutorial 58
funny india 56
spss certification 52
donald farmer microsoft 51
best statistical software 49

What about outgoing links? Apparently I need to find a way to ask Google to pay me for the free advertising I gave their chrome notebook launch. But since their search engine and browser is free to me, guess we are even steven.

Clicks for 365 days ending 2010-12-31 (Summarized)

2009-12-31 to Today

URL Clicks
rattle.togaware.com 378
facebook.com/Decisionstats 355
rapid-i.com/content/view/182/196 319
services.google.com/fb/forms/cr48basic 313
red-r.org 228
decisionstats.wordpress.com/2010/05/07/the-top-statistical-softwares-gui 199
teamwpc.co.uk/products/wps 162
r4stats.com/popularity 148
r-statistics.com/2010/04/r-and-the-google-summer-of-code-2010-accepted-students-and-projects 138
socserv.mcmaster.ca/jfox/Misc/Rcmdr 138
spss.com/certification 116
learnr.wordpress.com 114
dudeofdata.com/decisionstats 108
r-project.org 107
documentfoundation.org/faq 104
goo.gl/maps/UISY 100
inside-r.org/download 96
en.wikibooks.org/wiki/R_Programming 92
nytimes.com/external/readwriteweb/2010/12/07/07readwriteweb-report-google-offering-chrome-notebook-test-11919.html 92
sourceforge.net/apps/mediawiki/rkward/index.php?title=Main_Page 92
analyticdroid.togaware.com 88
yeroon.net/ggplot2 87

so in 2010,

SAS remained top daddy in business analytics,

R made revolutionary strides in terms of new packages,

JMP  launched a new version,

SPSS got integrated with Cognos,

Oracle sued Google and did build a great Data Mining GUI,

Libre Office gave you a non Oracle Open office ( or open even more office)

2011 looks like  a fun year. Have safe partying .

Top R Interviews

 

Portrait of baron A.I.Vassiliev (later - count)
Image via Wikipedia

 

Here is a list of the Top R Related Interviews I have done (in random order)-

1) John Fox , Creator of R Commander

http://decisionstats.com/2009/09/14/interview-professor-john-fox-creator-r-commander/

2) Dr Graham Williams, Creator of Rattle

http://decisionstats.com/2009/01/13/interview-dr-graham-williams/

3) David Smith, back when he was community Director of then Revolution Computing.

http://decisionstats.com/2009/05/29/interview-david-smith-revolution-computing/

and his second interview

http://decisionstats.com/2010/08/03/q-a-with-david-smith-revolution-analytics/

4) Robert Schultz, the first CEO of Revolution Computing (now Analytics)

http://decisionstats.com/2009/01/31/interviewrichard-schultz-ceo-revolution-computing/

5) Bob  Muenchen, author of R for SAS and SPSS users AND R for Stata users

http://decisionstats.com/2010/06/29/interview-r-for-stata-users/

http://decisionstats.com/2008/10/16/r-for-sas-and-spss-users/

6) Karim Chine, creator Biocep, Cloud Computing for R

http://decisionstats.com/2009/06/21/interview-karim-chine-biocep-cloud-computing-with-r/

7) Paul van Eikeran, Inference for R,the first enterprise package to use R from within MS Office.

http://decisionstats.com/2009/06/04/inference-for-r/

8) Hadley Wickham, creator GGPlot and R Author

http://decisionstats.com/2010/01/12/interview-hadley-wickham-r-project-data-visualization-guru/

Thats a lot of R interviews- I need to balance them out a bit I guess.