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Awesome website for #rstats Mining Twitter using R

Just came across this very awesome website.

Did you know there were six kinds of wordclouds in R.

(giggles like a little boy)

https://sites.google.com/site/miningtwitter/questions/talking-about

 

Simple Wordcloud

Comparison Wordcloud
Tweets about some given topic

Tweets of some given user (ex 1)
Tweets of some given user (ex 2)
Modified tag-cloud

This guy – the force is strong in him

Gaston Sanchez 
Data Analysis + Visualization + Statistics + R FUN

http://www.gastonsanchez.com/about

 Contact Info
 gaston.stat@gmail.com
> home
 
linkedIn
pinterest
resume.pdf
About Currently, I’m a postdoc in Rasmus Nielsen’s Lab in the Center for Theoretical Evolutionary Genomics at the University of California, Berkeley. I’m also collaborating with the Biology Scholars Program (BSP) at UC Berkeley, and I am affiliated to the Program on Reproductive Health and the Environment (PRHE) at UC San Francisco. In my (scarce) free time outside the academic world, I often work on collaborative projects for marketing analytics, statistical consulting, and statistical advising in general.

Interview Markus Schmidberger ,Cloudnumbers.com

Here is an interview with Markus Schmidberger, Senior Community Manager for cloudnumbers.com. Cloudnumbers.com is the exciting new cloud startup for scientific computing. It basically enables transition to a R and other platforms in the cloud and makes it very easy and secure from the traditional desktop/server model of operation.

Ajay- Describe the startup story for setting up Cloudnumbers.com

Markus- In 2010 the company founders Erik Muttersbach (TU München), Markus Fensterer (TU München) and Moritz v. Petersdorff-Campen (WHU Vallendar) started with the development of the cloud computing environment. (more…)

Interview Mike Boyarski Jaspersoft

Here is an interview with Mike Boyarski , Director Product Marketing at Jaspersoft

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the largest BI community with over 14 million downloads, nearly 230,000 registered members, representing over 175,000 production deployments, 14,000 customers, across 100 countries.

Ajay- Describe your career in science from Biology to marketing great software.
Mike- I studied Biology with the assumption I’d pursue a career in medicine. It took about 2 weeks during an internship at a Los Angeles hospital to determine I should do something else.  I enjoyed learning about life science, but the whole health care environment was not for me.  I was initially introduced to enterprise-level software while at Applied Materials within their Microcontamination group.  I was able to assist with an internal application used to collect contamination data.  I later joined Oracle to work on an Oracle Forms application used to automate the production of software kits (back when documentation and CDs had to be physically shipped to recognize revenue). This gave me hands on experience with Oracle 7, web application servers, and the software development process.
I then transitioned to product management for various products including application servers, software appliances, and Oracle’s first generation SaaS based software infrastructure. In 2006, with the Siebel and PeopleSoft acquisitions underway, I moved on to Ingres to help re-invigorate their solid yet antiquated technology. This introduced me to commercial open source software and the broader Business Intelligence market.  From Ingres I joined Jaspersoft, one of the first and most popular open source Business Intelligence vendors, serving as head of product marketing since mid 2009.
Ajay- Describe some of the new features in Jaspersoft 4.1 that help differentiate it from the rest of the crowd. What are the exciting product features we can expect from Jaspersoft down the next couple of years.
Mike- Jaspersoft 4.1 was an exciting release for our customers because we were able to extend the latest UI advancements in our ad hoc report designer to the data analysis environment. Now customers can use a unified intuitive web-based interface to perform several powerful and interactive analytic functions across any data source, whether its relational, non-relational, or a Big Data source.
 The reality is that most (roughly 70%) of todays BI adoption is in the form of reports and dashboards. These tools are used to drive and measure an organizations business, however, data analysis presents the most strategic opportunity for companies because it can identify new opportunities, efficiencies, and competitive differentiation.  As more data comes online, the difference between those companies that are successful and those that are not will likely be attributed to their ability to harness data analysis techniques to drive and improve business performance. Thus, with Jaspersoft 4.1, and our improved ad hoc reporting and analysis UI we can effectively address a broader set of BI requirements for organizations of all sizes.
Ajay-  What do you think is a good metric to measure influence of an open source software product – is it revenue or is it number of downloads or number of users. How does Jaspersoft do by these counts.
Mike- History has shown that open source software is successful as a “bottoms up” disrupter within IT or the developer market.  Today, many new software projects and startup ventures are birthed on open source software, often initiated with little to no budget. As the organization achieves success with a particular project, the next initiative tends to be larger and more strategic, often displacing what was historically solved with a proprietary solution. These larger deployments strengthen the technology over time.
Thus, the more proven and battle tested an open source solution is, often measured via downloads, deployments, community size, and community activity, usually equates to its long term success. Linux, Tomcat, and MySQL have plenty of statistics to model this lifecycle. This model is no different for open source BI.
The success to date of Jaspersoft is directly tied to its solid proven technology and the vibrancy of the community.  We proudly and openly claim to have the largest BI community with over 14 million downloads, nearly 230,000 registered members, representing over 175,000 production deployments, 14,000 customers, across 100 countries.  Every day, 30,000 developers are using Jaspersoft to build BI applications.  Behind Excel, its hard to imagine a more widely used BI tool in the market.  Jaspersoft could not reach these kind of numbers with crippled or poorly architected software.
Ajay- What are your plans for leveraging cloud computing, mobile and tablet platforms and for making Jaspersoft more easy and global  to use.
Mike-The cloud (more…)

JMP Genomics 5 released

Animation of the structure of a section of DNA...

Image via Wikipedia

Close to the launch of JMP9 with it’s R integration comes the announcement of JMP Genomics 5 released. The product brief is available here http://jmp.com/software/genomics/pdf/103112_jmpg5_prodbrief.pdf and it has an interesting mix of features. If you want to try out the features you can see http://jmp.com/software/license.shtml

As per me, I snagged some “new”stuff in this release-

  • Perform enrichment analysis using functional information from Ingenuity Pathways Analysis.+
  • New bar chart track allows summarization of reads or intensities.
  • New color map track displays heat plots of information for individual subjects.
  • Use a variety of continuous measures for summarization.
  • Using a common identifier, compare list membership for up tofive groups and display overlaps with Venn diagrams.
  • Filter or shade segments by mean intensity, with an optionto display segment mean intensity and set a reference valuefor shading.
  • Adjust intensities or counts for experimental samples using paired or grouped control samples.
  • Screen paired DNA and RNA intensities for allele-specific expression.
  • Standardize using a shifting factor and perform log2transformation after standardization.
  • Use kernel density information in loess and quantile normalization.
  • Depict partition tree information graphically for standard models with new Tree Viewer
  • Predictive modeling for survival analysis with Harrell’s assessment method and integration with Cross-Validation Model Comparison.

That’s right- that is incorporating the work of our favorite professor from R Project himself- http://biostat.mc.vanderbilt.edu/wiki/Main/FrankHarrell

Apparently Prof Frank E was quite a SAS coder himself (see http://biostat.mc.vanderbilt.edu/wiki/Main/SasMacros)

Back to JMP Genomics 5-

The JMP software platform provides:

• New integration capabilities let R users leverage JMP’s interactivegraphics to display analytic results.

• Tools for R programmers to build and package user interfaces that let them share customized R analytics with a broader audience.•

A new add-in infrastructure that simplifies the integration of external analytics into JMP.

 

+ For people in life sciences who like new stats software you can also download a trial version of IPA here at http://www.ingenuity.com/products/IPA/Free-Trial-Software.html

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